Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0488
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical ...    31   0.87 
Z92835-5|CAB07398.1|  168|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical
           protein W10D9.4 protein.
          Length = 403

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 20  FDNYVKPLRLYLTKYRE 70
           FDNY +P+R++L KYR+
Sbjct: 134 FDNYAEPMRIFLQKYRQ 150


>Z92835-5|CAB07398.1|  168|Caenorhabditis elegans Hypothetical
           protein H19N07.3 protein.
          Length = 168

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/73 (24%), Positives = 38/73 (52%)
 Frame = +1

Query: 142 KTARPVFQTKMKSIHKLNPPFSTSQALIQKSLKNLFLHD*DCSGIKISFLRMCDRIMLVY 321
           K  + V   KM ++ +       S++L+++   +LF      SG+ I    +C++ +++ 
Sbjct: 29  KDDKDVVYEKMCTLQERTDILKVSKSLVEEKWSSLFSE----SGLHIE--EVCEKELVLT 82

Query: 322 FKIDQNIVLLKTE 360
           F + +NI L +TE
Sbjct: 83  FALQRNITLERTE 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,921
Number of Sequences: 27780
Number of extensions: 301310
Number of successful extensions: 634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)