Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0488
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.3  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -3

Query: 343 QYFDRF*NKPT*YDHTFSKRIF*YRYNLNHVRINSSTTFG*VLGT*RTVDSVCVSISF 170
           +Y D++  KPT      ++++F  R+     +  S+  +   +GT  T D++  SIS+
Sbjct: 134 EYLDKY--KPTPLGAVATEKMFVARHLAETPKNTSAVRYTHYIGTLATNDNILESISY 189


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 497 IRLSSLYTSQDIECQVRPSMVHVSFCIFYL 408
           + + SL ++QD E      +  V+F IF+L
Sbjct: 261 MNVKSLVSNQDKERSAEVRIAKVAFTIFFL 290


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 636 GLXNRSSLFLKQYP 595
           GL N  SLF +QYP
Sbjct: 93  GLPNELSLFWQQYP 106


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 497 IRLSSLYTSQDIECQVRPSMVHVSFCIFYL 408
           + + SL ++QD E      +  V+F IF+L
Sbjct: 261 MNVKSLVSNQDKERSAEVRIAKVAFTIFFL 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,512
Number of Sequences: 438
Number of extensions: 3846
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)