Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0488
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14540.1 68417.m02240 CCAAT-box binding transcription factor ... 33 0.27
At5g47670.1 68418.m05885 CCAAT-box binding transcription factor ... 31 0.62
At2g13570.1 68415.m01496 CCAAT-box binding transcription factor,... 31 0.82
At1g21970.1 68414.m02749 CCAAT-box binding transcription factor ... 31 0.82
At2g38880.3 68415.m04778 histone-like transcription factor (CBF/... 31 1.1
At2g38880.2 68415.m04777 histone-like transcription factor (CBF/... 31 1.1
At2g32730.1 68415.m04005 26S proteasome regulatory subunit, puta... 31 1.1
At2g38880.1 68415.m04779 histone-like transcription factor (CBF/... 30 1.4
At5g47640.1 68418.m05882 CCAAT-box binding transcription factor ... 30 1.9
At3g29300.1 68416.m03678 hypothetical protein 30 1.9
At1g04810.1 68414.m00477 26S proteasome regulatory subunit, puta... 30 1.9
At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,... 29 3.3
At3g17490.1 68416.m02234 F-box family protein similar to F-box p... 29 3.3
At2g37060.2 68415.m04548 CCAAT-box binding transcription factor,... 29 3.3
At2g37060.1 68415.m04547 CCAAT-box binding transcription factor,... 29 3.3
At5g15050.1 68418.m01764 glycosyltransferase family 14 protein /... 28 7.6
At2g17820.1 68415.m02064 histidine kinase 1 99% identical to GP:... 28 7.6
>At4g14540.1 68417.m02240 CCAAT-box binding transcription factor
subunit B (NF-YB) (HAP3 ) (AHAP3) family contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone; similar to LEC1-like protein
(GI:22536010) [Phaseolus coccineus]
Length = 161
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 20 FDNYVKPLRLYLTKYREIVMSPALFAG 100
F++YV+PL++YL KYRE+ AG
Sbjct: 94 FEDYVEPLKVYLQKYREVEGEKTTTAG 120
>At5g47670.1 68418.m05885 CCAAT-box binding transcription factor
family protein / leafy cotyledon 1-related (L1L)
supporting cDNA gi|27372446|gb|AY138461.1|; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone; contains similarity to
CCAAT-binding transcription factor subunit A (CBF-A)
(NF-Y protein chain B) (NF-YB) (CAAT-box DNA binding
protein subunit B) (Swiss-Prot:P25209) [Zea mays]
Length = 234
Score = 31.5 bits (68), Expect = 0.62
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +2
Query: 20 FDNYVKPLRLYLTKYREI 73
FD+Y++PL LYL +YRE+
Sbjct: 131 FDDYIEPLTLYLHRYREL 148
>At2g13570.1 68415.m01496 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 215
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 20 FDNYVKPLRLYLTKYREIVMSPALFAGHNQQIEQDHSFI*RRRHGLCFKRK 172
F++YV PL++YL KYR+ QQ +Q + H F+ +
Sbjct: 109 FEDYVAPLKVYLCKYRDTEGEKVNSPKQQQQRQQQQQIQQQNHHNYQFQEQ 159
>At1g21970.1 68414.m02749 CCAAT-box binding transcription factor
(LEC1) similar to CAAT-box DNA binding protein subunit B
(NF-YB) (SP:P25209) (GI:22380) [Zea mays]; identical to
GB:AAC39488 GI:3282674 from [Arabidopsis thaliana] (Cell
93 (7), 1195-1205 (1998)); identified in Plant Cell 2003
Jan;15(1):5-18; contains Pfam PF00808 : Histone-like
transcription factor (CBF/NF-Y) and archaeal histone
Length = 238
Score = 31.1 bits (67), Expect = 0.82
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 20 FDNYVKPLRLYLTKYREI 73
FDNYV PL +++ +YREI
Sbjct: 132 FDNYVDPLTVFINRYREI 149
>At2g38880.3 68415.m04778 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 112
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/18 (50%), Positives = 17/18 (94%)
Frame = +2
Query: 20 FDNYVKPLRLYLTKYREI 73
F++Y++PL++YL +YRE+
Sbjct: 94 FEDYLEPLKIYLARYREV 111
>At2g38880.2 68415.m04777 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 112
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/18 (50%), Positives = 17/18 (94%)
Frame = +2
Query: 20 FDNYVKPLRLYLTKYREI 73
F++Y++PL++YL +YRE+
Sbjct: 94 FEDYLEPLKIYLARYREV 111
>At2g32730.1 68415.m04005 26S proteasome regulatory subunit,
putative contains similarity to 26S proteasome
regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
norvegicus]
Length = 1004
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 457 AKFVQAWFMYPSVYFI*EINISPTIFL 377
A F Q W+ YP +YFI + SPT F+
Sbjct: 774 AVFSQFWYWYPLIYFI-SLAFSPTAFI 799
>At2g38880.1 68415.m04779 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 141
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/18 (50%), Positives = 17/18 (94%)
Frame = +2
Query: 20 FDNYVKPLRLYLTKYREI 73
F++Y++PL++YL +YRE+
Sbjct: 94 FEDYLEPLKIYLARYREL 111
>At5g47640.1 68418.m05882 CCAAT-box binding transcription factor
subunit B (NF-YB) (HAP3 ) (AHAP3) family (Hap3b) similar
to CAAT-box DNA binding protein subunit B (NF-YB)
(SP:P25209) (GI:22380) [Zea mays]; contains Pfam PF00808
: Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; identical to cDNA transcription factor
Hap3b (Hap3b) mRNA, partial cds GI:9965734
Length = 190
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/18 (55%), Positives = 17/18 (94%)
Frame = +2
Query: 20 FDNYVKPLRLYLTKYREI 73
F++YV+PL++YL ++REI
Sbjct: 100 FEDYVEPLKVYLQRFREI 117
>At3g29300.1 68416.m03678 hypothetical protein
Length = 213
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 81 HQPYLQVTINKLNKTIVLYSEDGTACVSNE--NEIDTQTESTVLYVPSTYPKVVE 239
H+PYLQ +++ + +TIV S D +SN + T +T P + P +E
Sbjct: 97 HEPYLQASLDLIQETIVNDSVDNFIYISNPMYSNDATSKPTTPFETPESSPSRLE 151
>At1g04810.1 68414.m00477 26S proteasome regulatory subunit,
putative contains similarity to 26S proteasome
regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
norvegicus]
Length = 1001
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 451 FVQAWFMYPSVYFI*EINISPTIFL 377
F Q W+ YP +YFI + SPT F+
Sbjct: 776 FSQFWYWYPLIYFI-SLAFSPTAFI 799
>At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 228
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +2
Query: 20 FDNYVKPLRLYLTKYREI 73
F++Y+ PL++YL +YRE+
Sbjct: 102 FEDYIDPLKVYLMRYREM 119
>At3g17490.1 68416.m02234 F-box family protein similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; contains Pfam PF00646: F-box domain and
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 388
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 410 DKIYRRIHEPCLDELGIQYLEKYIETKVLLKHS 508
DK+YR + P ELG YL Y+ + V +K S
Sbjct: 341 DKVYREFYFPESYELGRTYLCNYVPSLVQIKQS 373
>At2g37060.2 68415.m04548 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 173
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/18 (50%), Positives = 17/18 (94%)
Frame = +2
Query: 20 FDNYVKPLRLYLTKYREI 73
F++Y++PL++YL +YRE+
Sbjct: 103 FEDYMEPLKVYLMRYREM 120
>At2g37060.1 68415.m04547 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 173
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/18 (50%), Positives = 17/18 (94%)
Frame = +2
Query: 20 FDNYVKPLRLYLTKYREI 73
F++Y++PL++YL +YRE+
Sbjct: 103 FEDYMEPLKVYLMRYREM 120
>At5g15050.1 68418.m01764 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 434
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -3
Query: 442 AWFMY--PSV-YFI*EINISPTIFLIYFLTFLSSVKQYF 335
AW M P V YFI + P I L+Y+ FLSS + YF
Sbjct: 266 AWMMLSRPFVDYFIWGWDNLPRIVLMYYANFLSSPEGYF 304
>At2g17820.1 68415.m02064 histidine kinase 1 99% identical to
GP:4586626
Length = 1207
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 69 KLLCHQPYLQVTINKLNKTIVLYSEDGTACVSNENEIDTQTESTVLYVPST 221
K + H+ +LQ + NK ++ + D T C + ++ D+ ES PST
Sbjct: 668 KQVQHRNHLQKSCKNANKMVLWFEVDDTGCGIDPSKWDSVFESFEQADPST 718
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,059,710
Number of Sequences: 28952
Number of extensions: 268008
Number of successful extensions: 599
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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