Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0487
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3ZR53 Cluster: Putative uncharacterized protein; n=1; ...    37   0.41 
UniRef50_A5K4S5 Cluster: Putative uncharacterized protein; n=2; ...    35   2.2  
UniRef50_UPI0000499E6B Cluster: pyridine nucleotide transhydroge...    34   3.9  
UniRef50_A0NKR0 Cluster: Membrane protein; n=2; Oenococcus oeni|...    33   5.1  

>UniRef50_Q3ZR53 Cluster: Putative uncharacterized protein; n=1;
           Lactobacillus paracasei subsp. paracasei|Rep: Putative
           uncharacterized protein - Lactobacillus paracasei subsp.
           paracasei
          Length = 161

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 18/44 (40%), Positives = 33/44 (75%)
 Frame = +2

Query: 476 FIISGTSNTLQLSLLWTTKVLFVIISILSLTIMEFSRKKKMLRF 607
           F+I    +++++ +LWT+ VLFVI++I+ + ++EF R KK+L F
Sbjct: 80  FLIISLDDSVRVMILWTSIVLFVILTIVQM-MLEF-RHKKLLAF 121


>UniRef50_A5K4S5 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 1316

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = +1

Query: 250 WRAHASRNQEPIRRITHFV*HASTILVPIIFIPRAYICKSILKE*TPKNCALQKQQLLTN 429
           +R+H      P RR       A  I++P++ I   Y            N +L K  L  N
Sbjct: 323 YRSHTDGYGSPNRRSDPVHVGAKVIIMPLVKIKYVYFSM------VDMNPSLTKLVLANN 376

Query: 430 N*KLFYDCISRLLFSFYYFRHF 495
           N  + YD + R  +S  YFRHF
Sbjct: 377 NMVILYDTVKR-RYSLLYFRHF 397


>UniRef50_UPI0000499E6B Cluster: pyridine nucleotide
           transhydrogenase beta subunit; n=1; Entamoeba
           histolytica HM-1:IMSS|Rep: pyridine nucleotide
           transhydrogenase beta subunit - Entamoeba histolytica
           HM-1:IMSS
          Length = 462

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 443 FTIVSRVYYFRFIISGTSNTLQLSLLWTTKVLFVIISILSLTI 571
           FT +  +    FII    NT +L+L WTT +L  + S +++ +
Sbjct: 180 FTFILSIILSSFIILVNDNTAKLALYWTTALLIALCSFITMMV 222


>UniRef50_A0NKR0 Cluster: Membrane protein; n=2; Oenococcus
           oeni|Rep: Membrane protein - Oenococcus oeni ATCC
           BAA-1163
          Length = 166

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
 Frame = +2

Query: 401 HFKNSNY*PIIKSYFTIVSRVYYF--RFIISGTSNTLQLSLLWTTKVLFVIISILSLTIM 574
           +F N NY  I+   F I++ V YF  RF+    S    L++    ++L ++ + ++  I 
Sbjct: 3   NFFNKNYEIILYLIFGILTTVVYFIARFLTLNLSKNALLAVA-VAQILAILFAFITNKIW 61

Query: 575 EFSRKKK---MLRFLRFISHR 628
            F + +K   +++FL+F++ R
Sbjct: 62  VFKKAEKAPLLIQFLKFVAAR 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,769,233
Number of Sequences: 1657284
Number of extensions: 11363396
Number of successful extensions: 28441
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28431
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)