Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0487
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     28   1.1  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    26   6.0  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    26   6.0  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   6.0  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    25   7.9  

>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 147 NNERNA-RSVRGFVADCRRSSPASPAITRPRVGS*LARARITQS 275
           NNE NA RS    + + R+S+  SP++     G+ +  AR++ S
Sbjct: 239 NNENNALRSTANVINNTRQSTATSPSMFAGNSGNQIGLARVSSS 282


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 443 FTIVSRVYYFRFIISGTSNTLQLSLLWTTKVLFVIISILSLT 568
           F I++ V+Y  FI+     TL +  +   ++L  I+   SLT
Sbjct: 96  FNIIASVFYVTFILFEMPTTLLMKKVQPKRMLAFIVISYSLT 137


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 228 ALSQVTPGCCAGSPPQSLVLIARFSHYC 145
           A + +T  C   SPP +LV+     H+C
Sbjct: 270 AATDLTLNCLKSSPPNALVIALCCHHHC 297


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 102 INETQNKRLTNI*KYNNERNARSVRGFVADCRRSSPASPAITRPRVG 242
           +N  Q  R+T+   +N +  + +   FV DC   +  SP +  P++G
Sbjct: 367 VNSMQKMRVTSPVDHNEQPESSTAEMFV-DCTIEASQSPLLHIPKLG 412


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 134 IC*SFVLCLVNLLIICSVSCCRNIELFLVLFRL 36
           +C  F   L+ +L ICS+ C   +  FLV F L
Sbjct: 1   MCPLFKTYLLYILKICSIPCLAYVVNFLVCFVL 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,702
Number of Sequences: 5004
Number of extensions: 49651
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)