Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0487
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498...    33   0.22 
04_04_0240 + 23851859-23851917,23852018-23852087,23852177-238533...    30   2.0  

>03_06_0565 + 34747278-34748066,34748170-34748406,34749777-34749869,
            34751752-34751988,34752398-34752584,34752956-34753028,
            34753145-34753289,34753670-34753779,34754127-34754258,
            34754328-34754469,34754545-34754679,34756278-34756435,
            34757327-34757401,34757505-34757643,34757838-34757952,
            34758016-34758107,34758500-34758613
          Length = 990

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +2

Query: 452  VSRVYYFRFIISGTSNTLQLSLLWTTKV---LFVIISILSLTIMEFSRKKKMLRFLRFIS 622
            V  + Y   +    S+T +L + WT K    LFV IS+L   +   S     L  L  + 
Sbjct: 820  VGHMVYMSGLTCTLSSTNKLEVAWTEKEPGSLFVNISLLPALLN--STCLHNLSLLSDLP 877

Query: 623  HRTNQ*HLLHLRLALNEANAI 685
            H TN+ H+ H+RL   + N++
Sbjct: 878  HSTNRTHICHVRLDHIDVNSL 898


>04_04_0240 +
           23851859-23851917,23852018-23852087,23852177-23853394,
           23853504-23854040
          Length = 627

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 167 ISTRLCGGLPAQQPGVTCDNAAARWLLIGARTHHAIRSQSG 289
           ++ +  G + A+  G T    A RWL I A+ HHA    +G
Sbjct: 206 VAVKATGTVHAKAIGDTLKAYARRWLPIAAKNHHAAERTAG 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,438,856
Number of Sequences: 37544
Number of extensions: 285808
Number of successful extensions: 605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)