Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0487
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    28   5.6  
U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
 Frame = +2

Query: 392 KIVHFKNSNY*PIIKSYFTIVSRVYYFRFIISG----------TSNTLQLSLLWTTKVLF 541
           K+V F N+N+   I ++F IVS +Y     I+G          TSN+L L      +VL 
Sbjct: 12  KVVEFFNNNHVNQIVTFFIIVSGIYVTMVSITGQNFLHPLSPVTSNSLNLQNA-ANEVLH 70

Query: 542 VIISILSLTIMEFSRKKKMLRFL 610
            IIS   + ++  +   K+++F+
Sbjct: 71  SIISCFMMVVLAVA-AGKLVKFI 92


>Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
 Frame = +2

Query: 392 KIVHFKNSNY*PIIKSYFTIVSRVYYFRFIISG----------TSNTLQLSLLWTTKVLF 541
           K+V F N+N+   I ++F IVS +Y     I+G          TSN+L L      +VL 
Sbjct: 12  KVVEFFNNNHVNQIVTFFIIVSGIYVTMVSITGQNFLHPLSPVTSNSLNLQNA-ANEVLH 70

Query: 542 VIISILSLTIMEFSRKKKMLRFL 610
            IIS   + ++  +   K+++F+
Sbjct: 71  SIISCFMMVVLAVA-AGKLVKFI 92


>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +1

Query: 250 WRAHASRNQEPIRRITHFV*HASTILVPIIFIPRAYICKSILKE*TPKNCALQKQQLLTN 429
           WR H + N +P RR T+FV     + V    I +  +    L+E   K   ++K+ L   
Sbjct: 357 WRYHLATNWKPPRRYTYFVHVCYKLYVTEERINQNRVLAKKLREKLEKKRPIKKKSLTHQ 416

Query: 430 N 432
           N
Sbjct: 417 N 417


>U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical
           protein F12D9.1b protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 158 SLIIVFSYIC*SFVLCLVNLLIICSV 81
           +L    +YIC S +LC+  L+++C V
Sbjct: 205 TLFSSITYICGSIILCIAVLMVVCVV 230


>U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical
           protein F12D9.1a protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 158 SLIIVFSYIC*SFVLCLVNLLIICSV 81
           +L    +YIC S +LC+  L+++C V
Sbjct: 227 TLFSSITYICGSIILCIAVLMVVCVV 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,236,209
Number of Sequences: 27780
Number of extensions: 279063
Number of successful extensions: 686
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)