Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0487
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.5  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   8.5  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 150 NERNARSVRGFVADCRRSSPASPAITRPRVGS*LARARITQSGANQAHNAFR 305
           N  +A+    F   CR  SP++P+ITR  + S   R      G N+    FR
Sbjct: 317 NVMSAKYRNAFKETCR-CSPSNPSITRTGLSS--VRDSSIICGGNKRSQVFR 365


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 89  CSVSCCRNIELFLVLFRLIFYXPVN 15
           C +SC  NI   ++L   +FY  V+
Sbjct: 105 CVLSCWTNIYYIIILAWALFYLLVS 129



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -3

Query: 98  LIICSVSCCRNIELFLVLFRLI 33
           LI+C+V+ C ++   +V+F ++
Sbjct: 316 LIVCTVNSCTSMLSGIVIFSVV 337


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 89  CSVSCCRNIELFLVLFRLIFYXPVN 15
           C +SC  NI   ++L   +FY  V+
Sbjct: 158 CVLSCWTNIYYIIILAWALFYLLVS 182



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -3

Query: 98  LIICSVSCCRNIELFLVLFRLI 33
           LI+C+V+ C ++   +V+F ++
Sbjct: 369 LIVCTVNSCTSMLSGIVIFSVV 390


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 484 NNKTKIINARYNRKITFNYWLV 419
           NNK    N  YN+K+ +  +++
Sbjct: 101 NNKYNYNNNNYNKKLYYKNYII 122


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 317 LACHTKCVMRLI 282
           L C+T C+M+L+
Sbjct: 65  LQCYTTCIMKLL 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,333
Number of Sequences: 438
Number of extensions: 3858
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)