Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0487
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44820.1 68414.m05134 aminoacylase, putative / N-acyl-L-amino...    29   3.0  
At5g20310.1 68418.m02417 hypothetical protein                          29   3.9  
At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding protei...    27   9.0  

>At1g44820.1 68414.m05134 aminoacylase, putative /
           N-acyl-L-amino-acid amidohydrolase, putative similar to
           aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase
           ACY-1)[Homo sapiens] SWISS-PROT:Q03154
          Length = 438

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +2

Query: 515 LLWTTKVLFVIISILSLTIMEFSRKKKMLRFLRFISHRTNQ*HLLHLRLALNEANAIPL 691
           LLWT  +  +I S+ S +  E +   +  ++LRF +   N  +   +   +N+A +I L
Sbjct: 6   LLWTLIIFSIIFSLQSSSSEEDTPITRFQQYLRFNTAHPNPNYTAPISFLINQAQSIGL 64


>At5g20310.1 68418.m02417 hypothetical protein
          Length = 394

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 309 SHEMRYAPDWLLIA*CVRAPIRSQRAAA--LSQVTPGCCAGSPPQS 178
           S+ MR+APD+  +    +  + S RAA   L QV P   +G+ P S
Sbjct: 138 SNVMRWAPDFCTVLVLSKGRLSSVRAATRPLPQVLPSSSSGTAPLS 183


>At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding
           protein-related contains weak similarity to CND41,
           chloroplast nucleoid DNA binding protein (GI:2541876)
           [Nicotiana tabacum]
          Length = 452

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 261 VRAPIRSQRAAALSQVTPGCCAGSPPQSLVLIA 163
           V++P+ S  A+   Q       G PPQSL+LIA
Sbjct: 69  VKSPVVSGAASGSGQYFVDLRIGQPPQSLLLIA 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,920,951
Number of Sequences: 28952
Number of extensions: 239792
Number of successful extensions: 488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)