Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0486
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 29 0.48
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 29 0.85
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 28 1.1
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 28 1.1
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 26 4.5
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 4.5
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 26 4.5
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 26 6.0
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 6.0
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 25 7.9
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 29.5 bits (63), Expect = 0.48
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 315 KINHFVDDISQLYNKFPEERFVGRYEFVNP 404
++ + V+ + +L NKFP+ F GR + P
Sbjct: 1509 EVEYLVNMVDELLNKFPDVNFTGRIGVITP 1538
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 28.7 bits (61), Expect = 0.85
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3
Query: 422 ISDVDHRIYKLVSTNESLFWK 360
+S V H YKLVS+NE L WK
Sbjct: 324 VSQVSHHWYKLVSSNEEL-WK 343
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 328 KWLILKTILPMLPSMGSGVMLLISCLLK*QYICFRYSKRAKPITNVH 188
+WL+L T P G L ++C Y+ F YS R+K I H
Sbjct: 479 EWLLLLTRKVFSPEFG----LFVNCEESSNYLWFNYSHRSKEIDYYH 521
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -3
Query: 533 QRKQIPSENGIGFLIDDRAMIQEMFKI-FNGDSLYNLNISDVDHRIYKLVSTNESLFWKF 357
Q +++ E+ + + + ++KI F+GDS Y LNI D D +I L+ L +K
Sbjct: 799 QTRKVKVESPLSNANELGELFSNVYKISFSGDS-YELNIEDPDTKISYLLEDLSDLKYKS 857
Query: 356 VV 351
+V
Sbjct: 858 LV 859
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 601 SFILELVKAGDKVDRISFHSWPFK 530
SFILE V G+ V R SF P++
Sbjct: 49 SFILESVTQGESVSRYSFIGSPYR 72
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 137 IISYQTEQKKRYNDYHYMDISDRF 208
+ S +T+ K NDY Y+ I DRF
Sbjct: 260 LTSSETDVPKNINDYIYLLIDDRF 283
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 374 SLFWKFVVQLRNIINKMVNLEDDLA 300
SLF+ + VQL + + ++L DDLA
Sbjct: 291 SLFYSWYVQLEQLFKEEISLIDDLA 315
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 231 QIYCYFSKHEIKSITPLPILGNMGKIVFKINHFVDDISQL--YNKFPEE 371
Q++CYFS+H S +P+ + IN+ VDD ++ Y +P E
Sbjct: 312 QMFCYFSQH--VSEWGIPLESAPDALEKLINYTVDDAGKIGAYTHWPIE 358
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.8 bits (54), Expect = 6.0
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -3
Query: 527 KQIPSENGIGFLIDDRAMIQEMFKIFNGDSLYNLNISDVDHRIYKLVSTNESLFWKFVVQ 348
K P + DD +I KIF G SL N + HR Y+L T+ +L + +
Sbjct: 315 KTPPCNDNFKIFSDDIKLIG--CKIFAGVSL-NFSSPKPAHRFYELNKTSSNLSIPVLQK 371
Query: 347 LRNIINKMVNLEDDLAH 297
N + L D+ H
Sbjct: 372 PSNFHSSSTELSDNSIH 388
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 7.9
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 306 IVFKINHFVDDISQLYNKFPEERFVGRYEFVNPVIYIRDIEIVKRITIKDFEHFLD 473
+V KI+ +DIS + FP F + VNPV Y D T++D F+D
Sbjct: 409 VVAKIDATENDISVSISGFPTIMFFKANDKVNPVRYEGD------RTLEDLSAFID 458
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,769
Number of Sequences: 5004
Number of extensions: 62782
Number of successful extensions: 219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -