Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0485
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0202 - 1638978-1639571 66 2e-11
02_01_0158 - 1103461-1104186 66 2e-11
11_06_0416 + 23307984-23308281,23310083-23310900 31 1.1
07_03_0595 + 19845631-19845972 29 4.2
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 28 5.6
10_01_0130 + 1540412-1541173 28 7.4
08_01_0229 + 1834102-1834358,1834442-1834901 28 7.4
09_06_0175 + 21350528-21351136 27 9.8
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665... 27 9.8
02_01_0616 + 4616936-4617307,4618723-4618809,4619322-4619384,461... 27 9.8
>08_01_0202 - 1638978-1639571
Length = 197
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Frame = +3
Query: 141 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 320
+E+V GTVKWF+ G+GFI +D ED+FVHQ+++ + RS+ DG+ VEF+V +
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSD----GYRSLNDGDVVEFSVGS 58
Query: 321 GEKG-FEAAGVTGP 359
G G +A VT P
Sbjct: 59 GNDGRTKAVDVTAP 72
>02_01_0158 - 1103461-1104186
Length = 241
Score = 66.5 bits (155), Expect = 2e-11
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +3
Query: 141 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 320
A + GTVKWFN G+GFI+ +D ED+FVHQ++I + RS+ +GE VEFA+
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD----GFRSLAEGEQVEFAISE 59
Query: 321 GEKG-FEAAGVTGP 359
E G +A VTGP
Sbjct: 60 SEDGRTKAVDVTGP 73
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 442 HLDEGNIGGGSHGACLQHKVSLLLAHHRGPVTP 344
HLD+ N+ G +G + K+SLL A H G P
Sbjct: 89 HLDDPNVDGVRNGVRARFKISLLAAAHDGSHPP 121
>07_03_0595 + 19845631-19845972
Length = 113
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 508 GWAGVHDVLILLCVELLHRLVRHLDEGNIGGGSHGA 401
G V +V I + + L L+R L+EG+ GGG GA
Sbjct: 48 GGEKVTEVKIRITRKQLEELLRRLEEGSDGGGGGGA 83
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 356 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHK 228
T N ++ FLP G + L + D ++ W ++ + SL HK
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHK 333
>10_01_0130 + 1540412-1541173
Length = 253
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 261 PRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPRW*ASKRLTLCCRQAPWLP 416
P +A +V EA E A+ E F +TG R A++ LC +P P
Sbjct: 8 PPRASAAVSPNEAAEAALRLAENMFLRGDLTGARREAARARALCPAPSPLHP 59
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 38 GVIGERRWWQRW 3
GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145
>09_06_0175 + 21350528-21351136
Length = 202
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 241 LPSPVTTHVRLCARSATERRWSLPW-LPGRKA-LKQLVLLVPGGEPVKGSPYAADKRRG 411
+ PV H C RS R +LP P R A +V+L+PGG +G+ RRG
Sbjct: 1 MSKPVRRHG--CRRSRRPGRNALPTNRPARAAEAPSVVVLLPGGVGARGARRCVRPRRG 57
>04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,
6653569-6653766,6654485-6654568,6655175-6655920,
6656480-6657341
Length = 1194
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 469 VELLHRLVRHLDEGNIGGGSHGACLQHKVSLLL 371
++L+ RLVR L GG + A ++HK++L++
Sbjct: 951 IKLVDRLVRVLSPEGSGGSTRYAGMRHKLTLVI 983
>02_01_0616 +
4616936-4617307,4618723-4618809,4619322-4619384,
4619478-4619537,4619570-4619602,4621584-4621751
Length = 260
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 285 GDGEAVEFAVVAGEKGFEAAGVTGPRW*ASKRLTLCCRQAPWLP 416
GD +AV ++ +G + AG T P W +S + W P
Sbjct: 5 GDDDAVAAGIICSLRGADLAGWTPPWWCSSSSKGAAREELIWPP 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,039,787
Number of Sequences: 37544
Number of extensions: 263692
Number of successful extensions: 968
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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