Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0485
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)                   54   1e-07
SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            29   2.5  
SB_26212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)               29   4.3  
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)          28   5.7  
SB_45652| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)
          Length = 80

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/71 (39%), Positives = 43/71 (60%)
 Frame = +3

Query: 138 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 317
           ++ + +GTVKWFN + GYGFI    + +D+FVH  AI  +      +S+ +G+AV F   
Sbjct: 12  MSNRQNGTVKWFNDEKGYGFIT-PQSGDDLFVHFKAIQSD----GFKSLKEGQAVTFVAT 66

Query: 318 AGEKGFEAAGV 350
            G+KG +A  V
Sbjct: 67  RGQKGMQAEEV 77


>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 358 PGGEPVKGSPYAADKRRGYHR 420
           P GEPV+GS YA D+RR  +R
Sbjct: 23  PDGEPVQGSKYAPDRRRRNNR 43


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +1

Query: 169 GSTSRVDMVSSTGMTPRKMCLCIRLPSPVTTHVRLCARSATERRWSLPWLPGRKALKQLV 348
           G++S +  VSST  +P +  +C  L  P    + LC    TE R  +P LP       L+
Sbjct: 440 GTSSSIWDVSSTPRSPTRTPVCYALMIPFGHMLSLC--MDTEGRLRVPLLPTHGFAYALL 497

Query: 349 LLVP 360
           +L P
Sbjct: 498 ILGP 501


>SB_26212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 369 ASKRLTLCCRQAPWLPP 419
           AS   T+C RQAPWL P
Sbjct: 19  ASPTWTICLRQAPWLSP 35


>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
          Length = 851

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 615 PGXPPTASTAKIATEKTAXRWYNASFLTLISLCTPL 508
           PG PPT  T ++  +++A R      LT +SL TPL
Sbjct: 229 PGTPPTPPTVRLRKKESASR-IPPPLLTTMSLDTPL 263


>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 141 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVH 236
           AEK  G V   ++K  +GFI R D   ++F H
Sbjct: 201 AEKYQGVVS--SMKESFGFIERADKVSEIFFH 230


>SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)
          Length = 1093

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 437 KVADEAVKELHAEED*DVVDPRPTKGVHKEMRVKKEALYHLXAVFSVA 580
           K   E++  ++ ++D   + PRP K + +E+R +KE  Y   +V S A
Sbjct: 626 KTQKESLATINGDDDVKDLYPRPHKQLGEELRPEKEEHYRPWSVASKA 673


>SB_45652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 138 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGD 290
           +A+  +    +  VKSGY   +  DTK +V   Q A     P+   R+ GD
Sbjct: 60  MADGYTAFFSFSRVKSGYSVFSGKDTKAEVPSLQAAQHLPEPKGRKRTTGD 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,247,381
Number of Sequences: 59808
Number of extensions: 276418
Number of successful extensions: 792
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)