Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0485
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061440-1|AAL28988.1|  352|Drosophila melanogaster LD37574p pro...   139   3e-33
AE014296-2093|AAF49961.3|  352|Drosophila melanogaster CG5654-PA...   139   3e-33
U49120-1|AAB94634.1|  359|Drosophila melanogaster Y-box protein ...   132   3e-31
AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p pro...    56   6e-08
AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding ...    56   6e-08
AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA...    56   6e-08
AY060441-1|AAL25480.1|  143|Drosophila melanogaster LD47312p pro...    32   0.59 
AE014296-2798|AAN11740.1|  143|Drosophila melanogaster CG9705-PB...    32   0.59 
AE014296-2797|AAF49414.1|  143|Drosophila melanogaster CG9705-PA...    32   0.59 

>AY061440-1|AAL28988.1|  352|Drosophila melanogaster LD37574p
           protein.
          Length = 352

 Score =  139 bits (336), Expect = 3e-33
 Identities = 65/75 (86%), Positives = 69/75 (92%)
 Frame = +3

Query: 135 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 314
           VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIARNNP+KAVRSVGDGE VEF V
Sbjct: 57  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116

Query: 315 VAGEKGFEAAGVTGP 359
           V GEKG EAA VTGP
Sbjct: 117 VIGEKGNEAANVTGP 131



 Score = 34.7 bits (76), Expect = 0.11
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 322 GRKALKQLVLLVPGGEPVKGSPYAADKRRGY 414
           G K  +   +  P GEPV+GS +AADKRR +
Sbjct: 119 GEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149


>AE014296-2093|AAF49961.3|  352|Drosophila melanogaster CG5654-PA
           protein.
          Length = 352

 Score =  139 bits (336), Expect = 3e-33
 Identities = 65/75 (86%), Positives = 69/75 (92%)
 Frame = +3

Query: 135 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 314
           VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIARNNP+KAVRSVGDGE VEF V
Sbjct: 57  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116

Query: 315 VAGEKGFEAAGVTGP 359
           V GEKG EAA VTGP
Sbjct: 117 VIGEKGNEAANVTGP 131



 Score = 34.7 bits (76), Expect = 0.11
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 322 GRKALKQLVLLVPGGEPVKGSPYAADKRRGY 414
           G K  +   +  P GEPV+GS +AADKRR +
Sbjct: 119 GEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149


>U49120-1|AAB94634.1|  359|Drosophila melanogaster Y-box protein
           protein.
          Length = 359

 Score =  132 bits (320), Expect = 3e-31
 Identities = 64/75 (85%), Positives = 68/75 (90%)
 Frame = +3

Query: 135 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 314
           VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIA NNP+KAVRSVGDGE VEF V
Sbjct: 58  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIA-NNPKKAVRSVGDGEVVEFDV 116

Query: 315 VAGEKGFEAAGVTGP 359
           V GEKG EAA VTGP
Sbjct: 117 VIGEKGNEAANVTGP 131



 Score = 34.7 bits (76), Expect = 0.11
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 322 GRKALKQLVLLVPGGEPVKGSPYAADKRRGY 414
           G K  +   +  P GEPV+GS +AADKRR +
Sbjct: 119 GEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149


>AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p
           protein.
          Length = 195

 Score = 55.6 bits (128), Expect = 6e-08
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = +3

Query: 156 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 335
           G  KWFNV  G+GF+  ND  ++VFVHQ+ I  +      RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96

Query: 336 EAAGVT 353
           EA  V+
Sbjct: 97  EATRVS 102


>AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding
           protein LIN-28 protein.
          Length = 195

 Score = 55.6 bits (128), Expect = 6e-08
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = +3

Query: 156 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 335
           G  KWFNV  G+GF+  ND  ++VFVHQ+ I  +      RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96

Query: 336 EAAGVT 353
           EA  V+
Sbjct: 97  EATRVS 102


>AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA
           protein.
          Length = 195

 Score = 55.6 bits (128), Expect = 6e-08
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = +3

Query: 156 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 335
           G  KWFNV  G+GF+  ND  ++VFVHQ+ I  +      RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96

Query: 336 EAAGVT 353
           EA  V+
Sbjct: 97  EATRVS 102


>AY060441-1|AAL25480.1|  143|Drosophila melanogaster LD47312p
           protein.
          Length = 143

 Score = 32.3 bits (70), Expect = 0.59
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 150 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 248
           V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55  VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


>AE014296-2798|AAN11740.1|  143|Drosophila melanogaster CG9705-PB,
           isoform B protein.
          Length = 143

 Score = 32.3 bits (70), Expect = 0.59
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 150 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 248
           V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55  VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


>AE014296-2797|AAF49414.1|  143|Drosophila melanogaster CG9705-PA,
           isoform A protein.
          Length = 143

 Score = 32.3 bits (70), Expect = 0.59
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 150 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 248
           V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55  VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,963,543
Number of Sequences: 53049
Number of extensions: 411036
Number of successful extensions: 1387
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)