Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0485
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...   116   1e-26
U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    80   2e-15
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    76   3e-14
Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical pr...    73   2e-13
AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical ...    73   2e-13
Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical pr...    52   3e-07
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    52   3e-07
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       52   3e-07
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       52   3e-07
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid...    27   8.7  
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    27   8.7  

>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score =  116 bits (279), Expect = 1e-26
 Identities = 53/75 (70%), Positives = 58/75 (77%)
 Frame = +3

Query: 135 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 314
           V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI  NNP K +RS+GD E V F +
Sbjct: 16  VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75

Query: 315 VAGEKGFEAAGVTGP 359
           V G KG EAA VTGP
Sbjct: 76  VEGSKGLEAASVTGP 90



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 322 GRKALKQLVLLVPGGEPVKGSPYAADK 402
           G K L+   +  P G PV+GS YAAD+
Sbjct: 78  GSKGLEAASVTGPDGGPVQGSKYAADR 104


>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
 Frame = +3

Query: 138 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFAV 314
           I   + G VKW++V   YGFI+RND ++D+FVHQTAIA++   K  +R++GD E V F +
Sbjct: 62  ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121

Query: 315 VAGEKGFEAAGVTGP 359
           V G+ G EAA VTGP
Sbjct: 122 VEGKNGPEAANVTGP 136


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 37/76 (48%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
 Frame = +3

Query: 135 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFA 311
           V+   + G VKW++V   YGFI+R+D ++DVFVHQTAI++++  K  +R++ D E V F 
Sbjct: 59  VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118

Query: 312 VVAGEKGFEAAGVTGP 359
           +V G+ G EAA VTGP
Sbjct: 119 LVDGKNGPEAANVTGP 134


>Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
 Frame = +3

Query: 135 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 302
           VI   V G VKWF+V+  YGF+ R+   D  ED FVHQTAI +++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 303 EFAVVAGEKGFEAAGVTGP 359
            F +V G KG EAA VTGP
Sbjct: 144 VFDIVEGLKGPEAANVTGP 162


>AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
 Frame = +3

Query: 135 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 302
           VI   V G VKWF+V+  YGF+ R+   D  ED FVHQTAI +++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 303 EFAVVAGEKGFEAAGVTGP 359
            F +V G KG EAA VTGP
Sbjct: 144 VFDIVEGLKGPEAANVTGP 162


>Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical
           protein F02E9.2b protein.
          Length = 196

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
 Frame = +3

Query: 156 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 329
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 24  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79

Query: 330 GFEAAGVTG 356
           G EA  V+G
Sbjct: 80  GREAYAVSG 88


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
 Frame = +3

Query: 156 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 329
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 330 GFEAAGVTG 356
           G EA  V+G
Sbjct: 111 GREAYAVSG 119


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
 Frame = +3

Query: 156 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 329
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 330 GFEAAGVTG 356
           G EA  V+G
Sbjct: 111 GREAYAVSG 119


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
 Frame = +3

Query: 156 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 329
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 330 GFEAAGVTG 356
           G EA  V+G
Sbjct: 111 GREAYAVSG 119


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 280  RSATERRWSLPWLPGRKALKQLVLLVPGGEPVKGSPY 390
            +  +E  WS  W P  +   +L +LV  GE + GSP+
Sbjct: 1774 KKVSETLWSAVWTPKVEGEHELSILV-AGEQIPGSPF 1809


>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 555 WYNASFLTLISLCTPLVGR 499
           W NASFLTL++   P++G+
Sbjct: 371 WQNASFLTLLNELEPVLGK 389


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 555 WYNASFLTLISLCTPLVGR 499
           W NASFLTL++   P++G+
Sbjct: 371 WQNASFLTLLNELEPVLGK 389


>U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid
           phosphatase protein4 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 555 ISXQFFPSQFSRWTPW 602
           I  Q++P+QF ++TPW
Sbjct: 236 IEKQYYPAQFKQFTPW 251


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
           protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 555 WYNASFLTLISLCTPLVGR 499
           W NASFLTL++   P++G+
Sbjct: 371 WQNASFLTLLNELEPVLGK 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,705,997
Number of Sequences: 27780
Number of extensions: 196780
Number of successful extensions: 582
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)