Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0483
         (714 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    54   3e-06
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    41   0.026

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 54.4 bits (125), Expect = 3e-06
 Identities = 24/31 (77%), Positives = 25/31 (80%)
 Frame = +2

Query: 527  SRVFPELYDMSFFKRGLWRVLNGRQRAWLCP 619
            S VFPE YDMSFFKRGLWRVL+GRQR    P
Sbjct: 947  STVFPERYDMSFFKRGLWRVLSGRQRLGSAP 977


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 41.1 bits (92), Expect = 0.026
 Identities = 17/22 (77%), Positives = 18/22 (81%)
 Frame = +2

Query: 641 GDGNHSPSGGPYARLPYRSKKK 706
           GDGNHSPSG PYA LP R+K K
Sbjct: 2   GDGNHSPSGRPYASLPTRAKMK 23


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 723,157,934
Number of Sequences: 1657284
Number of extensions: 14664381
Number of successful extensions: 36557
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36537
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)