Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0483
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   1.1  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   1.4  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    24   1.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.7  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   9.9  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +3

Query: 531 GCFPSSMTCPSSNEACGEY*TVGSGLGSA----PGIAEVHGATVTTHHQXGRMPVCPTGA 698
           GC P S   P     CG   +  + L SA    PG+  +HG  V + H    M   P G 
Sbjct: 9   GCNPDSELFPGFGSTCGGSSSSMAYLKSAPYPVPGLG-LHGLPVDSLH--SSMAGYPAGN 65

Query: 699 KKKKK 713
           ++K++
Sbjct: 66  QRKQR 70


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 555 CPSSNEACGEY*TVGSGLGSAPGIAEVHGATV 650
           C    E+C     VGSG  SAP I   HG  V
Sbjct: 15  CDDEVESCIAV-GVGSGRNSAPSICGEHGHCV 45


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 260 ELWTIEKNVRNHPKSI 307
           E W ++ N +NHP+ +
Sbjct: 43  EFWDLDLNAQNHPRGL 58


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 641 GDGNHSPSGGP 673
           G GN+ P GGP
Sbjct: 530 GSGNNQPPGGP 540


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 578 WRVLNGRQRAWLCP 619
           W  +NG+Q  + CP
Sbjct: 46  WECVNGQQELYDCP 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,853
Number of Sequences: 336
Number of extensions: 3760
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)