Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0483
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    27   2.7  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    26   4.7  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.7  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   4.7  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    26   4.7  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.7  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    26   4.7  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    26   6.1  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.1  

>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 215 YNYELCSGVPSIRVSELWTIEKNVRNHPKSIF 310
           +N  L + +  IR +EL  IEK + ++P S+F
Sbjct: 231 FNMPLLTMIKGIRHAELIAIEKILEHYPASVF 262


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 488 IPSRTLQHIMVKVPKVLYRRCFSLGTLFFT 399
           IP+ T  HI+V+V  +L   CF +G  F+T
Sbjct: 149 IPAHT--HIVVRVLLLLLSICFFVGAAFYT 176


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 391 LPLVKKRVPRLKHLRYKTFGTLTIICCKVRDGIDI 495
           L L+    P L HLR+  + +L   CC+  + + I
Sbjct: 132 LRLLLSHSPHLHHLRFSDWQSLVSYCCQAIEKLSI 166


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 680 GHTAXLMVSGYRRPMDFSNARGRAKPAAYRLILS 579
           G T  +  +G   PM   N  G   PA Y LILS
Sbjct: 480 GKTLTIETTGANNPMLAGNVVGLLSPALYILILS 513


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 333 TTDLFSQFNWSQRYTWLPVSSSREKKSTEAKAPTIQDFWNFDH 461
           ++DL   F     ++   + S ++ KST++K+PT+  F  F++
Sbjct: 33  SSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFEN 75


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 488 IPSRTLQHIMVKVPKVLYRRCFSLGTLFFT 399
           IP+ T  HI+V+V  +L   CF +G  F+T
Sbjct: 149 IPAHT--HIVVRVLLLLLSICFFVGAAFYT 176


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 206 YLCYNYELCSGVPSIRVSELW-TIEKNVRNHPKSIFNLKCQ 325
           +L  N++ CS +PS++ + +W   E +VR +      + C+
Sbjct: 79  FLSTNFQDCSTLPSVKSTLIWPASETHVRKYSSQKKRMVCE 119


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -1

Query: 153 NPPDDEWLSSFMESVIPGAEASRCLLLPITHYS*FYLRS 37
           NPP DEW   F E V+   EA+  L     HYS FY  S
Sbjct: 67  NPPTDEW--GFCE-VLGADEAASQL---AAHYSSFYTES 99


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 348 SQFNWSQRYTWLPVSSSREKKSTEAKAPTIQDFWNFDHN 464
           SQF+   RY W P+  +R       + P I+  ++++ N
Sbjct: 436 SQFSNQSRYNWEPILENRSLLHLN-RPPPIETHYSYESN 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,258
Number of Sequences: 5004
Number of extensions: 62234
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)