Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0483
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0128 - 10437407-10438049,10438097-10438272                       29   3.7  
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112...    29   4.8  
06_03_0843 + 25315089-25315417,25317274-25317310,25317439-253176...    28   8.5  

>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = -2

Query: 656 SGYRRPMDFSNARGRAKPAAYRLILSTSLV*RRTCHRARETPERSCE 516
           +G  RP D   AR R  P   R   STS    RTC RA       C+
Sbjct: 112 AGIHRPDDGHRARQRHLPRRSRSTASTSSTTCRTCCRATPNSTSPCK 158


>05_06_0212 +
           26410330-26410419,26410562-26410846,26411005-26411208,
           26411636-26411692,26411859-26412926
          Length = 567

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
 Frame = +3

Query: 288 EIILSPFLI*SV--K*NTTDLFSQFNWSQRYT----WLPVSSSREKKSTEAKAPT 434
           +++ SP L+ ++  + +  D  S FNW +R+T    W P+S  +    T+AK  T
Sbjct: 212 KLLASPILVEALHFQYDERDPNSAFNWLERWTIGRVWRPISHPKRAAVTDAKPHT 266


>06_03_0843 +
           25315089-25315417,25317274-25317310,25317439-25317675,
           25317745-25317792,25318144-25318577,25318675-25318759
          Length = 389

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 619 GAEPSPLPTV*YSPQASFEEGHVIELGKHPR 527
           G EP P P    SP A+ E+G V+EL   PR
Sbjct: 23  GVEPPPSP----SPAAAAEDGAVVELSGVPR 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,477,403
Number of Sequences: 37544
Number of extensions: 409152
Number of successful extensions: 1047
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)