Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0483
         (714 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031723-1|CAC42157.1|  381|Homo sapiens protein ( Human DNA seq...    31   5.4  
AB002293-1|BAA20755.1|  981|Homo sapiens KIAA0295 protein.             30   9.5  

>AL031723-1|CAC42157.1|  381|Homo sapiens protein ( Human DNA
           sequence from clone LA16c-439A6 on chromosome 16
           Contains the 3' part of the gene for a novel protein
           similar to heparan  ).
          Length = 381

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 678 AYGPPDGEWLPSPHGLQQCQGQSQARCLP 592
           A GPP  E  P  HGL   + + +AR LP
Sbjct: 1   AAGPPGAEHKPGTHGLSGARAEMRARLLP 29


>AB002293-1|BAA20755.1|  981|Homo sapiens KIAA0295 protein.
          Length = 981

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -2

Query: 530 ERSCEKLTSIKPMSIPSRTLQHIMVKVPKVLYRRCFSLGTLFFT 399
           +  C+K +S+KP  IPS++L+      P +  ++ ++  T  FT
Sbjct: 204 KEKCKKPSSLKPEKIPSKSLKSARPIAPAIPPQQIYTFQTATFT 247


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,227,976
Number of Sequences: 237096
Number of extensions: 2347759
Number of successful extensions: 4864
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4861
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)