Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0483
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa...    28   7.1  
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa...    28   7.1  
At5g53610.1 68418.m06660 glycosyl hydrolase family protein 17 si...    27   9.3  

>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
           profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
           PF00628 PHD-finger
          Length = 885

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 101 PGITDSMNDDNHSSSGGLSAGL 166
           PGI +S N+D HS +GG S+GL
Sbjct: 636 PGIINSYNEDPHSIAGG-SSGL 656


>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
           profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
           PF00628 PHD-finger
          Length = 873

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 101 PGITDSMNDDNHSSSGGLSAGL 166
           PGI +S N+D HS +GG S+GL
Sbjct: 636 PGIINSYNEDPHSIAGG-SSGL 656


>At5g53610.1 68418.m06660 glycosyl hydrolase family protein 17
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 110

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 655 VVTVAPWTSAMPGAEPSPL 599
           VVT  PW SAMP + P  L
Sbjct: 22  VVTCEPWCSAMPSSTPEQL 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,772,376
Number of Sequences: 28952
Number of extensions: 329447
Number of successful extensions: 830
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)