Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0482
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   1.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   7.3  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   9.7  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 411 NKWKPGEPNDSHNN 452
           N W+   PND+ NN
Sbjct: 386 NHWRKNNPNDNRNN 399


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +3

Query: 222 DAKKTCEMEGATFFYPDDKFEFDAVTTYWNTSQP 323
           D +      G   + PD+ FE     TY+N + P
Sbjct: 65  DCEGVIRHHGQWNYSPDNHFEQYPNPTYYNLADP 98


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 366 GVFETVDGVSIMDVYNKW 419
           GV  T+  + I  ++NKW
Sbjct: 47  GVIITIGCLCIWSIFNKW 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,135
Number of Sequences: 336
Number of extensions: 3702
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)