Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0482
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 29 0.48
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 29 0.48
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 1.5
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 2.6
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 3.4
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 4.5
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 26 6.0
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 26 6.0
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 7.9
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 29.5 bits (63), Expect = 0.48
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +3
Query: 234 TCEMEGATFFYPDDKFEFDAVTTYWNTSQPFEWISIGISSQMAKG--VFETVDGVSIMDV 407
TC EG + AV ++ S PF I++ +Q A G + ++ V + DV
Sbjct: 72 TCGSEGEIHLWDIRSQAKSAVRSWTQQSTPFTCIALNKKNQFATGSELTRSLASVQLWDV 131
Query: 408 YNKWK-PGEPNDSHNNE 455
++ K + ND+HN++
Sbjct: 132 RSEQKLIRQWNDAHNDD 148
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 29.5 bits (63), Expect = 0.48
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -2
Query: 195 FCKSSQLIRYTYSPYGKTYFPVVHE*VXEGNKVRRNNMGNLRLFILNL 52
FCK S+ R TY K Y+ +H E N++R N+ LF NL
Sbjct: 471 FCKLSRTWRSTYEQCFKNYYETIHR--YETNRLR-----NIALFFANL 511
>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 543 ASLEWNVNCDIPNTDYAYSDVLGRCYKMYLTPMTWSEAYR 662
+S++W+ N + NTDY Y ++ C+ P+ + A R
Sbjct: 187 SSMDWSCNMTLCNTDYPY--LVNTCFNGTQYPVNCNSALR 224
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 523 LYARKHWLRSSGM*IVTFLTPTTHTAMYLADATRCI*P 636
+YA WL SG+ + + L +A+Y AD +C+ P
Sbjct: 873 IYANAQWLSYSGLSLESSLGLGFLSAVYHADRKKCLLP 910
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 585 DYAYSDVLGRCYKMYLT 635
D+ S+++GRC+ MY+T
Sbjct: 420 DHPVSEIVGRCFVMYIT 436
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = -1
Query: 646 QVIGVKYIL*HRPSTSLYA*SVLGMSQFTFHSSEASV----FLHINGKDFAQSSSFISPS 479
+V +IL + STS+Y S+ G+S ++ H S LH + IS +
Sbjct: 268 EVQAPSHILMSKDSTSIYTISLEGLSIYSLHDESKSYMLIKILHFQSISKIEHIELISDN 327
Query: 478 FL 473
FL
Sbjct: 328 FL 329
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = +3
Query: 144 FFRKDYTYIESTESFYKIHTLYKKW-VDAKKTCEMEGATFFYPDDKFEFDAVTTYWNTSQ 320
F D + E +I T +K W + K+ + FF P+D E + +
Sbjct: 840 FSDDDLKLMNEEEIMEQIET-FKAWSMKFKEKSSGNPSYFFSPEDTEEKELWNNLFEDWY 898
Query: 321 PFEWISIGISSQMAKGVFETVDGVS 395
P G S + KG+ ET D +S
Sbjct: 899 PNRARDPGTLSHLVKGLKETADHLS 923
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 135 ENKFFRKDYTYIESTESFYKIHTLYKKWVDAK 230
E KDYT E + F K +YKK D K
Sbjct: 5 EESEINKDYTVQEDLDEFAKYTCVYKKRHDEK 36
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 181 RAFTKFTRYIRNGWTLRRL-AKWRGLLSFTLMTSLNSML*PLIGTRHNPSN 330
+A+TK +IRNG + ++W+GL + TL S S + H PSN
Sbjct: 435 KAWTK--HFIRNGESAAYAWSQWKGLYNLTLNMSYISFVMAAWKLYHLPSN 483
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 426 PASICYTRPLWRHHQQFRRLLWPSAMRSRY 337
P SICY + LWR ++ +L++ + + Y
Sbjct: 946 PGSICYNQRLWRRNRN-EKLIYRTRPLAEY 974
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,948
Number of Sequences: 5004
Number of extensions: 62477
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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