Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0482
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561...    30   2.0  
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834     29   3.5  
08_02_0363 + 16238710-16240224,16240537-16240545                       28   6.2  
01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,432...    28   8.2  

>01_06_0902 +
           32853708-32853739,32854787-32855596,32856094-32856157,
           32856375-32856446
          Length = 325

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = -3

Query: 593 CVVGVRNVTIHIPLE-RSQCFLAYKWERFRTVIIVHKSVISMDDDAIFVVMR 441
           C VGV+++T+      RS    +   E F+ + +V+ + ISMDDD +F++ R
Sbjct: 183 CEVGVKDITLGASNPCRSNLSFSEIVEMFKELPMVNPT-ISMDDDVVFLLSR 233


>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
          Length = 253

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 483 GLMNDDDCAKSFPFICKKTLASLEWNVNCDIPNTDYAYSDVLGRCYKMYLTP 638
           G  + D+C +   + C  T  ++  +  C  P      + + G C K +LTP
Sbjct: 194 GCQDIDECEEHENYHCYGTCKNILGSFECSCPAGTRGNASIEGACQKNFLTP 245


>08_02_0363 + 16238710-16240224,16240537-16240545
          Length = 507

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
 Frame = +3

Query: 480 DGLM-NDDDCAKSFPFICKKTLASLEWNVNCDIPNTDYAYSDVLGRCYKMYLTPMTWS-- 650
           D LM ND+DCA  F  +C         N N D P+ +Y   + +    +    P  W+  
Sbjct: 413 DHLMRNDEDCATKFAALCDGV------NFNLDDPSRNYLQKECVALDQRYRSRPSQWTAW 466

Query: 651 ----EAYRVCSADQSYLAII 698
                    C A  S LAII
Sbjct: 467 MLREHCRNPCVAVASVLAII 486


>01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,
            4329925-4331469,4332220-4332429,4332563-4332713,
            4332791-4333031,4333898-4333956,4334379-4334653,
            4334813-4334955,4335034-4335088,4335181-4335258,
            4335351-4335478,4335533-4335575
          Length = 1173

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 284  IRCCDHLLEHVTTLRMDQYRDLIADGQ 364
            IRC  H   HV  L M   RD++  GQ
Sbjct: 1079 IRCLSHPSAHVRALSMSVLRDILNSGQ 1105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,207,951
Number of Sequences: 37544
Number of extensions: 380551
Number of successful extensions: 984
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)