Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0481
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 1.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.0
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.4
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 26 4.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.5
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 26 6.0
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.0
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 25 7.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 7.9
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 7.9
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 1.5
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Frame = +3
Query: 159 EYKLEGDVVKVKNVHIIDGVKKYIE---GTAKL-TDDANKAAKLTVTFKFGEISRDGSVQ 326
EY++EG +++ N IID + E G KL KA + T+T E D Q
Sbjct: 600 EYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSE-PLDTPEQ 658
Query: 327 V---LATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIK-EHSKEI 494
V L N ++A + +SH VF+ L+ + G+ + N I S+ +
Sbjct: 659 VTWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERL 718
Query: 495 DSSKLV 512
SS+ V
Sbjct: 719 SSSQSV 724
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 432 KLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEE 533
K+EGDAKT DN +++ K D K D++EE
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 513 HTDFSEEACKFTSSSVITEHRKTLNTEKIL*SNCGGIKTELVTPXFKINHXGFWF 677
H + S + KF +S + R LNT +N KT + F +H GF+F
Sbjct: 130 HRELSSDIVKFLNSIFLALTR-ILNTPHSSNNNPTHTKTTIFEKVFYASHLGFFF 183
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 244 SSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSL 396
SS P P ++ ++ S+RL + T+P+L N RKSL
Sbjct: 147 SSTMIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSL 197
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 355 PSLTTANTMTRKSLIKCSSGSSLETRSLKATLKLLSIISSRNTPKR*TL 501
P+LTT+NT + S SS +E+ S+ + + I++ +TP T+
Sbjct: 296 PNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTI 344
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +3
Query: 483 SKEIDSSKLVHTDFSEEACKFT---SSSVITEHR 575
+KEI+SSK TD E FT SSS HR
Sbjct: 96 AKEIESSKNQETDAKSEQAPFTEDASSSNYAHHR 129
>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 190
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -1
Query: 583 NVFRCSVITLELV--NLQASSEKSVCTSFEESISLE 482
N F +++++ +V ++ KS+CT+F SIS E
Sbjct: 20 NFFLTNILSMSVVFRTVEDPELKSICTTFTSSISAE 55
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -2
Query: 402 LDETFSCHRICSCKRWRSYYSQSP 331
L E H+ C+ K W YS+ P
Sbjct: 439 LVEVILAHKNCTLKEWNQLYSEIP 462
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 69 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 227
N N +GI E+SK+ + KN + SS + K V+ + I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = -1
Query: 595 FSVFNVFRCSVITLELVNLQASSEKSVCTSFEESISLECSLMKLST--AVLASPSSFLFL 422
FS + C V+ ++ VN++ E S +S E+ + S ST A++ P+ + L
Sbjct: 153 FSQIDPETCHVLHIDKVNIKYPMESSDSSSTEQQLVGPSSKPFASTTPALIELPTCVVCL 212
Query: 421 ERIQTN 404
ER+ ++
Sbjct: 213 ERMDSS 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,372
Number of Sequences: 5004
Number of extensions: 55350
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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