Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0481
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012... 60 2e-09
02_04_0592 - 24171698-24172285 50 1e-06
07_01_1023 + 8840754-8842988,8843189-8843362 31 0.67
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 31 0.67
04_03_0376 + 15105874-15106230,15109207-15111573 30 2.0
03_01_0608 + 4471738-4472115 29 2.7
08_02_1423 + 26975466-26975508,26976253-26976365,26976505-269765... 29 3.5
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262... 29 4.7
05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366... 29 4.7
10_01_0334 - 3680612-3681266,3682253-3682374 28 8.2
>08_02_0805 +
21400345-21400701,21400797-21400975,21401223-21401271,
21401310-21401390,21401988-21402605
Length = 427
Score = 60.1 bits (139), Expect = 2e-09
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +3
Query: 54 LKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKKY 227
+K V N +L Y G WYEI+ FP+ + ++G + A Y L GD VKV N DG + +
Sbjct: 1 MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGH 60
Query: 228 IEGTAKLTDDANKAAKLTVTF 290
IEGTA D + AKL V F
Sbjct: 61 IEGTAYRADPVSDEAKLKVKF 81
>02_04_0592 - 24171698-24172285
Length = 195
Score = 50.4 bits (115), Expect = 1e-06
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 4/171 (2%)
Frame = +3
Query: 21 AEVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVKV 191
A + + + E+ V ++ Y G WYEI+ PN + ++G+ + A Y L +G V V
Sbjct: 3 AAAVEKKSGSEMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDV 62
Query: 192 KN-VHIIDGVKKYIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYN 368
N G + YI+GTA D A+ AKL V F V + DY + +
Sbjct: 63 LNETWTSSGKRDYIKGTAYKADPASDEAKLKVKFYLPPFL---PVIPVVGDYWVLYVDDD 119
Query: 369 CKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTD 521
+Y + + +WIL R ++ + + KE +++ + D
Sbjct: 120 YQYALVGEPRRKDLWILCRQTSMDDEVYGRLLEKAKEEGYDVEKLRKTPQD 170
>07_01_1023 + 8840754-8842988,8843189-8843362
Length = 802
Score = 31.5 bits (68), Expect = 0.67
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 36 EGTCPELKP-VNNFNLTAYQGIW-YEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHII 209
EG C + + + NL G+W +++S N S K G C A D++ KN+ I+
Sbjct: 288 EGLCEDANDTIPSTNLMITAGVWGHDVS---NYSAKEGLCEEAN-----DIIPRKNLTIV 339
Query: 210 DGV 218
DGV
Sbjct: 340 DGV 342
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 63 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 179
V NFN+ + G WY IS N + C E+++EGD
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239
>04_03_0376 + 15105874-15106230,15109207-15111573
Length = 907
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/95 (17%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = +3
Query: 363 YNCKYDDKKKSHQVFVWI-LSRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEEAC 539
Y C+Y+++ + +WI +S+N L+ + ++ K+ + S + ++ C
Sbjct: 235 YVCEYEEEANHFDIVMWIHVSQNFGLDTILREMIEQATKQPCPQFKSLTALQKRLKQDLC 294
Query: 540 KFTSSSVI--TEHRKTLNTEKIL*SNCGGIKTELV 638
+ V+ EH K ++ + + GG ++++
Sbjct: 295 EKRFLLVLDDVEHNKDISEDDLSALEVGGAGSKIL 329
>03_01_0608 + 4471738-4472115
Length = 125
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 447 RRLQASCF*RGSRRTLDETFSCHRICSCKR 358
+RL+A+ RG ++ DE F C R+C+ KR
Sbjct: 32 QRLKAA---RGREKSSDEVFVCERVCTSKR 58
>08_02_1423 +
26975466-26975508,26976253-26976365,26976505-26976561,
26976607-26976801,26976912-26977060,26977145-26977307,
26977865-26977957,26978075-26978158,26978865-26979004,
26979093-26979192
Length = 378
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 117 FPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTA-KLTDDANKAAKLTVTFK 293
F S G EY+ E V +V +G+KK ++G A K +D+ L
Sbjct: 209 FAEPSGTEGTEEEGEYEDESIVHHTASVGDDEGLKKALDGGADKDEEDSEGRRALHFACG 268
Query: 294 FGEISRDGSVQV 329
+GE+S D ++ +
Sbjct: 269 YGEVSNDKNISL 280
>11_06_0410 -
23223701-23223714,23223863-23225159,23225314-23226225,
23226952-23227023,23227323-23227471,23227879-23227912
Length = 825
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 607 LQSIFSVFNVFRC-SVITLELVNLQASSEKSVCTSFEESISLECSL 473
L+S+ ++ ++RC S + L +N+Q ++ K + +F S L C L
Sbjct: 316 LKSLVTLDKIWRCDSALLLTSINMQGNNMKDMALAFALSRLLRCRL 361
>05_01_0463 -
3666626-3666933,3667060-3667258,3667388-3667629,
3667823-3669035
Length = 653
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 366 NCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDN 467
+CK D H + + N+ LEGD ++ +DN
Sbjct: 556 SCKQDTSDDDHAAYFPVQVANELLEGDVRSLLDN 589
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 185 EGQERAYHRRRQEVYRRDGQAHRRRQ*SRKAN 280
EGQE+A RRR R+ QA R R+ KA+
Sbjct: 39 EGQEKATQRRRAARMRQRQQAARGREDGEKAS 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,553,283
Number of Sequences: 37544
Number of extensions: 342015
Number of successful extensions: 1089
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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