Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0480
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379...    96   2e-20
11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398...    78   9e-15
09_02_0443 + 9443540-9444016                                           29   5.2  
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875...    28   6.9  

>12_01_0482 -
           3791630-3791698,3791983-3792124,3792202-3792344,
           3792833-3792958,3794307-3794444,3794540-3794622,
           3794738-3794825,3796147-3796344
          Length = 328

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 56/153 (36%), Positives = 75/153 (49%), Gaps = 5/153 (3%)
 Frame = +1

Query: 307 NINKNRYKDIAPYDATRVILNNGPTG-----DYINASYINMPIPNSDLVLTYIATQGPLA 471
           N  KNRY D+ P+D TRV L    T      DYINAS+I +   N   V  +I+TQGPLA
Sbjct: 84  NREKNRYIDVVPFDTTRVRLKRSTTSQTSSNDYINASFIKVTEDNR--VAKFISTQGPLA 141

Query: 472 STVGDFWQMVWESESSLIVMLTVVSERWXAKCHQYWPKVGTTPLXATNALTVLTNSEQNF 651
            T  DFW+MV+E +  +IVMLT        KC +Y P            + +      + 
Sbjct: 142 KTFDDFWEMVYEYQCPVIVMLTQFDS---LKCDEYLPLRKQREAYGKYNVKITNAKRDSH 198

Query: 652 GHYIRREMTLXEXSGASRNVTHLQYTXWPDHXV 750
             ++R  M     S    +V H++Y  WPDH V
Sbjct: 199 QLWLRDVMVQCNESSRVHSVRHIEYPDWPDHGV 231


>11_01_0514 -
           3985204-3985266,3985920-3986061,3986144-3986276,
           3986703-3986817,3987496-3987549,3987787-3987912,
           3989179-3989319,3989470-3989552,3989643-3989733,
           3990318-3990405,3992705-3992832
          Length = 387

 Score = 77.8 bits (183), Expect = 9e-15
 Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 5/103 (4%)
 Frame = +1

Query: 289 ASKLPHNINKNRYKDIAPYDATRVIL-----NNGPTGDYINASYINMPIPNSDLVLTYIA 453
           A++ P N  KNRY D+ P+D TRV L     ++  + +YINAS I            +I+
Sbjct: 85  AAQNPANREKNRYSDVMPFDETRVRLKPSASDHPSSNEYINASLIETDDQGQSHT-KFIS 143

Query: 454 TQGPLASTVGDFWQMVWESESSLIVMLTVVSERWXAKCHQYWP 582
           TQGPL  T GDFWQMV+E++  +IVM+T       AKC +Y P
Sbjct: 144 TQGPLVKTFGDFWQMVYENQCPVIVMVTKFD---GAKCDRYLP 183



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 703 RNVTHLQYTXWPDHXV 750
           R+V H+ Y+ WPDH V
Sbjct: 277 RHVLHILYSDWPDHGV 292


>09_02_0443 + 9443540-9444016
          Length = 158

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2

Query: 143 AGSSXALSAVTYTAFGLTSRVSTPLVVLMS 54
           AGS  AL+ +T T   L   V+TPL+VL S
Sbjct: 49  AGSMLALAGLTATGTALALIVATPLLVLFS 78


>04_04_1189 +
           31586991-31587291,31587358-31587397,31587449-31587534,
           31587535-31588097,31588250-31589913,31589956-31590066,
           31590152-31591181,31591234-31591406,31591535-31591814,
           31592275-31592331
          Length = 1434

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +1

Query: 262 RRQPDEPTAASKLPHNINKNRYKDIAPYDATRVILNNGPTGDYINASYINMPIP 423
           +R+ +EPT ++ LPH+I ++  K I      R++ N   TG+ + +  + + IP
Sbjct: 189 KREEEEPTDSTMLPHDIKRDISKRI-----NRIVNNLQKTGNSV-SGVLQLEIP 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,301,753
Number of Sequences: 37544
Number of extensions: 326972
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)