Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0480
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1) i... 92 4e-19
At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1) i... 92 4e-19
At2g47210.1 68415.m05896 myb family transcription factor contain... 31 0.82
At3g11580.2 68416.m01415 DNA-binding protein, putative similar t... 31 1.1
At3g11580.1 68416.m01414 DNA-binding protein, putative similar t... 31 1.1
At2g31260.1 68415.m03817 autophagy 9 (APG9) identical to autopha... 29 2.5
At5g12380.1 68418.m01456 annexin, putative similar to annexin [F... 28 5.8
>At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1)
identical to protein tyrosine phosphatase 1 GI:3170531
from [Arabidopsis thaliana]; contains Pfam profile:
PF00102 protein-tyrosine phosphatase
Length = 277
Score = 91.9 bits (218), Expect = 4e-19
Identities = 53/153 (34%), Positives = 75/153 (49%), Gaps = 5/153 (3%)
Frame = +1
Query: 307 NINKNRYKDIAPYDATRVILN---NGPTGDYINASYINMPIPNSDLVLTYIATQGPLAST 477
N+ KNRY D+ P+D R++LN + Y+NAS I S+ + +IATQGPL T
Sbjct: 87 NVEKNRYSDVVPFDKNRIVLNPCKDSSAKGYVNASLIKTS--ESESISQFIATQGPLPHT 144
Query: 478 VGDFWQMVWESESSLIVMLT-VVSERWXAKCHQYWPKVGTTPLXATNALTVLTNSEQNFG 654
+ DFW+MV + +IVMLT +V KC Y+ +LT +
Sbjct: 145 MEDFWEMVIQQHCPIIVMLTRLVDNNRTVKCGDYFQDEDGPREFGNISLTTKWIKTTDTS 204
Query: 655 HYIRR-EMTLXEXSGASRNVTHLQYTXWPDHXV 750
+R E+ E +V H+QY WPDH V
Sbjct: 205 LMLRNLEVNYKETEDQPMSVLHIQYPEWPDHGV 237
>At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1)
identical to protein tyrosine phosphatase 1 GI:3170531
from [Arabidopsis thaliana]; contains Pfam profile:
PF00102 protein-tyrosine phosphatase
Length = 340
Score = 91.9 bits (218), Expect = 4e-19
Identities = 53/153 (34%), Positives = 75/153 (49%), Gaps = 5/153 (3%)
Frame = +1
Query: 307 NINKNRYKDIAPYDATRVILN---NGPTGDYINASYINMPIPNSDLVLTYIATQGPLAST 477
N+ KNRY D+ P+D R++LN + Y+NAS I S+ + +IATQGPL T
Sbjct: 87 NVEKNRYSDVVPFDKNRIVLNPCKDSSAKGYVNASLIKTS--ESESISQFIATQGPLPHT 144
Query: 478 VGDFWQMVWESESSLIVMLT-VVSERWXAKCHQYWPKVGTTPLXATNALTVLTNSEQNFG 654
+ DFW+MV + +IVMLT +V KC Y+ +LT +
Sbjct: 145 MEDFWEMVIQQHCPIIVMLTRLVDNNRTVKCGDYFQDEDGPREFGNISLTTKWIKTTDTS 204
Query: 655 HYIRR-EMTLXEXSGASRNVTHLQYTXWPDHXV 750
+R E+ E +V H+QY WPDH V
Sbjct: 205 LMLRNLEVNYKETEDQPMSVLHIQYPEWPDHGV 237
>At2g47210.1 68415.m05896 myb family transcription factor contains
Pfam profile: PF00249 myb DNA-binding domain
Length = 441
Score = 31.1 bits (67), Expect = 0.82
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +1
Query: 256 LLRRQPDEPTAASKLPHNINKNRYKDIAPYDATRVILNNGPTGDYINASY 405
L RR P + A K N R D+ Y RV+ + PTGDY A Y
Sbjct: 58 LKRRPPADEKVAWKWLSFTNSARKDDLQLYHWVRVVNDVPPTGDYSFAKY 107
>At3g11580.2 68416.m01415 DNA-binding protein, putative similar to
DNA-binding proteins from [Arabidopsis thaliana] RAV1
GI:3868857 and RAV2 GI:3868859, AP2 domain containing
protein RAP2.8 [Arabidopsis thaliana] GI:2281641;
contains Pfam profile PF02362: B3 DNA binding domain
Length = 230
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 490 WQMVWESESSLIVMLTVVSERWXAKCHQYWPKVGTTPLXATNALTVLTNSEQNFGHY 660
W+ E+ SS V +VVS+ YW + TTP +A T N Q + HY
Sbjct: 139 WRRRGEASSSPAV--SVVSQEALVNTTAYWSGL-TTPYRQVHASTTYPNIHQEYSHY 192
>At3g11580.1 68416.m01414 DNA-binding protein, putative similar to
DNA-binding proteins from [Arabidopsis thaliana] RAV1
GI:3868857 and RAV2 GI:3868859, AP2 domain containing
protein RAP2.8 [Arabidopsis thaliana] GI:2281641;
contains Pfam profile PF02362: B3 DNA binding domain
Length = 267
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 490 WQMVWESESSLIVMLTVVSERWXAKCHQYWPKVGTTPLXATNALTVLTNSEQNFGHY 660
W+ E+ SS V +VVS+ YW + TTP +A T N Q + HY
Sbjct: 139 WRRRGEASSSPAV--SVVSQEALVNTTAYWSGL-TTPYRQVHASTTYPNIHQEYSHY 192
>At2g31260.1 68415.m03817 autophagy 9 (APG9) identical to autophagy
9 protein GI:19912149 from [Arabidopsis thaliana]
Length = 866
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 588 WNHTVEXHQRTDRPDEQ*TEFRTLHQERND 677
W +T + H RTD P E+ E T +Q D
Sbjct: 678 WYYTSQAHNRTDHPIERANEILTANQNATD 707
>At5g12380.1 68418.m01456 annexin, putative similar to annexin
[Fragaria x ananassa] GI:6010777, annexin p33 [Zea mays]
GI:6272285; contains Pfam profile PF00191: Annexin
Length = 316
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 319 NRYKDIAPYDATRVILNNGPTGDYINA 399
NRYKDI T+ +LN+ PT +Y++A
Sbjct: 205 NRYKDIYGTSITKDLLNH-PTNEYLSA 230
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,379
Number of Sequences: 28952
Number of extensions: 251763
Number of successful extensions: 593
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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