Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0479
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   4.2  
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    22   5.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.5  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 258 LKNVLFQRVLPNVKLGANLEIQPAT 332
           L+N+  +RVLP V+ G    + PAT
Sbjct: 21  LENIRDRRVLPTVEPGYLRPLIPAT 45


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 408 VNAQMTGSLMVLSHHPAMLSLSVVHVKETI 497
           V++ +  +LMVL++HP +    V  +K+ +
Sbjct: 1   VSSAINFALMVLANHPTVQEEIVQEMKDVL 30


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 290 KRKTWSKFGDSASDKPGPNPATTNVAED 373
           KRKTW    DS S     +P   + + D
Sbjct: 105 KRKTWKVEEDSPSPTSSVSPEVKDSSRD 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,261
Number of Sequences: 336
Number of extensions: 2757
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)