Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0479
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    80   3e-16
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    29   0.48 
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   2.0  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    27   3.4  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   6.0  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    25   7.9  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.9  

>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 10/143 (6%)
 Frame = +2

Query: 122 WADEVEIDQGVLPPPSEVVEN--GLKIVTEYKYDNDNKKVKIVRTYK---IEKRVVSKSI 286
           WAD+ +   G+  P  +  +N  G K + E++ D++ KKVK+ R  +   I +RV   ++
Sbjct: 9   WADDEDYGTGL--PSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVIRKTVITERV-QHAV 65

Query: 287 AKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQ----FITSKEXSQRPDDGELDGLK-PP 451
           A+RK W KFG  A    G +  TT+V E+V ++    + T+KE  Q  D+  L   K   
Sbjct: 66  AERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQ--DEAALAAAKVKA 123

Query: 452 SSNVIFKCRTCQGDHLTLYCPFK 520
             + + +CR C+G+H T  CP+K
Sbjct: 124 KGSSVVRCRACKGNHFTAQCPYK 146


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 158 PPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAK 292
           PP ++VV+         K   D++ + +V TY I K  V+ +IAK
Sbjct: 337 PPQADVVQACADKAISIKKSTDSRLLVVVSTYSIGKEKVAVAIAK 381


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/81 (24%), Positives = 31/81 (38%)
 Frame = +2

Query: 224 NKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKE 403
           NK  + +    IEK  V K  AKRK + + G     K  P        E+     +  + 
Sbjct: 172 NKSAQKLNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELSDEETNEDDLLGQS 231

Query: 404 XSQRPDDGELDGLKPPSSNVI 466
            +    D  +D   P +S+ I
Sbjct: 232 PTACTTDANIDNSIPENSDKI 252


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 131 EVEIDQGVLPPPSEVVENGLKIVTEYKY 214
           EVE++  V+ P S   EN  + V +Y Y
Sbjct: 114 EVEVNSEVVKPDSATTENENRYVNQYNY 141


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +2

Query: 164 PSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGP 343
           PS  +    K   + KY+N +  + I R       V+  S   R+ +  F D  +D+P  
Sbjct: 50  PSPTLAGMAKRTLKLKYENMDAALSINR------EVLCYSKDAREIYYNFEDEVADEPAE 103

Query: 344 NPATTN 361
            PA+T+
Sbjct: 104 APASTS 109


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 131 EVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSI 286
           EVE+D+ V    + V    LKIV E KY  +  +    R   +E   +  SI
Sbjct: 106 EVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRTRKSFVELNALQTSI 157


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 180 STTSEGGGSTPWSISTSSAQEA*NSSATGMS 88
           STTS    +TP + S+SS+  + +SS++  S
Sbjct: 131 STTSSSSSATPSTTSSSSSSSSSSSSSSSKS 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,904
Number of Sequences: 5004
Number of extensions: 44256
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)