Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0479
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1015 + 33512023-33512359,33513550-33514082                       85   4e-17
02_05_1014 + 33510108-33510471,33510857-33511362                       53   2e-07
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620...    30   2.0  
12_01_0964 + 9685989-9686459                                           29   4.7  
04_04_1575 + 34548774-34549109,34549979-34550185                       28   6.2  
04_03_0872 + 20452534-20453271                                         28   6.2  

>02_05_1015 + 33512023-33512359,33513550-33514082
          Length = 289

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 61/205 (29%), Positives = 92/205 (44%), Gaps = 16/205 (7%)
 Frame = +2

Query: 122 WADEVEIDQG----VLPPP--SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---V 274
           W +  E D+G    +LPP   S   ENG K V EY++D+   KVK+ RT+++ K     +
Sbjct: 12  WGELEEDDEGDLDFLLPPRVVSGPDENGFKKVVEYRFDDKGNKVKVTRTFRVRKIARARL 71

Query: 275 SKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEXSQRPDDGELDGLKPPS 454
           SKS  +R++W KFGD+  +  G      +  E V  +       ++ P     D L   S
Sbjct: 72  SKSAIERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPRAPGSKAEEP-SASGDPLASKS 130

Query: 455 SNVIFKCRTC--QGDHLTLYCPFK----HTQIXXXXXXXXXXXXXXXXXXSNKYIPPS-S 613
             V+  CRTC  +GDH T  CP+K     T+                      Y+PPS  
Sbjct: 131 GAVLMVCRTCGKKGDHWTSKCPYKDLAPQTEAFVDRPPTADGSGPPGGAVKGAYVPPSMR 190

Query: 614 AGRIPGRDQPPVRREXVTAIRISNL 688
           +G +        RR    ++R++NL
Sbjct: 191 SGAVDRVGHDMRRRNDENSVRVTNL 215


>02_05_1014 + 33510108-33510471,33510857-33511362
          Length = 289

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
 Frame = +2

Query: 161 PPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---VSKSIAKRKTWSKFGDS 322
           PP  V+   ENG+K   EY+ + + K V++  T ++ +     V+K  A+R+ W+KFGD+
Sbjct: 36  PPRVVIGPDENGIKKTVEYRLNEEGKAVRVTTTTRVREVARTRVTKRAAERRGWAKFGDA 95

Query: 323 ASDKPGPNPATTNVAEDVFMQFITSKEXSQRPDDGELDGLKPPSSNVIFKCRTCQGDHLT 502
           A +       T    E++ ++         + +D  +  L   ++ ++ +    +G H T
Sbjct: 96  AHNDDAGARLTVVSPEEIVLE--RPSAPGSKSEDPLIPALDKGAALMVCRICNAKGKHWT 153

Query: 503 LYCPFK 520
             CP K
Sbjct: 154 SKCPNK 159


>01_07_0248 +
           42261373-42261609,42261733-42261905,42261986-42262058,
           42262148-42262282,42262352-42262562,42262886-42263034,
           42263169-42263267,42263821-42263989,42264176-42264308,
           42264600-42264694,42264774-42264882,42265136-42265295,
           42265433-42265594,42265814-42265985,42266254-42266402,
           42266914-42266951,42267779-42267839,42267913-42268155,
           42268233-42268315,42269521-42269609,42270449-42270495,
           42270576-42270656,42270737-42270899,42271077-42271267,
           42271691-42271762
          Length = 1097

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +2

Query: 89  DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKV-KIVRTYKIEK 265
           D  +  E +A+WA      Q VL P   +    LK       D    +V  + + YKI +
Sbjct: 698 DQELLAEAEAAWAQREWTIQHVLFPSMRLF---LKPPKSMATDGTFVQVASLEKLYKIFE 754

Query: 266 RVVSKSIAKRKTWSKFGDSASDKPGPNPA 352
           R + KS  K  T + F +S    P  NP+
Sbjct: 755 RSLQKSKRKANTPTNFLESLQTTPDQNPS 783


>12_01_0964 + 9685989-9686459
          Length = 156

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 161 VEVHLGQSRPHQPRKPEILQQQACRNIYFIHQLLFCNL--SXEVIIDR 24
           VE+   QS   Q R  +++QQQ C+ +  I Q   C    S +VI+ +
Sbjct: 58  VEIPFFQSPVFQLRNCQVMQQQCCQQLRMIAQQSHCQAVSSVQVIVQQ 105


>04_04_1575 + 34548774-34549109,34549979-34550185
          Length = 180

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 89  DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKI 259
           D+PV  +F A W     +   V+   +E  E  LKIV   K D+D    +++  YK+
Sbjct: 85  DLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIV---KIDHD-ANPQLIEEYKV 137


>04_03_0872 + 20452534-20453271
          Length = 245

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 403 FLTGDELHEDIFSYISSSRVRP 338
           F+ GDELHED F + SS    P
Sbjct: 31  FVAGDELHEDDFLFSSSPAAPP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,425,387
Number of Sequences: 37544
Number of extensions: 291350
Number of successful extensions: 892
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)