Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0479
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 59 4e-16
SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06) 30 2.1
SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5) 30 2.1
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28) 29 4.8
SB_11500| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.3) 29 4.8
SB_10815| Best HMM Match : EGF (HMM E-Value=5.7e-09) 28 6.3
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05) 28 6.3
SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32) 28 6.3
SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08) 28 8.4
SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46) 28 8.4
SB_5605| Best HMM Match : Peptidase_C2 (HMM E-Value=2e-13) 28 8.4
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 59.3 bits (137), Expect(2) = 4e-16
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +2
Query: 140 IDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRK 298
+ + +PP SEV E KIVTEYK D++ K KI+ TY++E R V+K IAKRK
Sbjct: 71 LSESQIPPSSEVREGENKIVTEYKRDDEGKLQKIITTYRVETRRVAKEIAKRK 123
Score = 43.2 bits (97), Expect(2) = 4e-16
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +2
Query: 395 SKEXSQR--PDDGELDGLKPPSSNVIFKCRTCQGDHLTLYCPFK 520
+KE ++R PD E D LK S I +CR C+GDH T CP+K
Sbjct: 116 AKEIAKRKNPDATEEDPLKKLSGQKIVQCRICKGDHWTTKCPYK 159
>SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)
Length = 159
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +2
Query: 422 DGELDG--LKPPSSNVIFKCRTCQGDHLTLYCPFKHTQ 529
DG+ G KPP S + KC C G H C F ++
Sbjct: 100 DGDTTGNPRKPPQSATVSKCYRCDGKHDPRSCVFSQSK 137
>SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)
Length = 297
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 260 EKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEXSQRPDDGELDG 439
E+ + +KS + K+ S GDS S P P+ + + ++V Q ++ + D E G
Sbjct: 74 EEAIGAKSENEEKSESSSGDSESPPPKPHVSAKELIDEVVKQEMSKHKKKNNDGDSEETG 133
>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +2
Query: 422 DGELDG--LKPPSSNVIFKCRTCQGDHLTLYCPFKHTQ 529
DG+ G KPP S + KC C G H C F ++
Sbjct: 1230 DGDTTGNPRKPPQSATVSKCYRCDGKHDPRSCVFSQSK 1267
>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
Length = 834
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 152 VLPPPSEVVENGLKI-VTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSAS 328
++ S+ +EN KI + E +N+N +++ Y R K +++KT S+ + +
Sbjct: 464 IIDESSKNIENRNKIELLEDAAENENSGIRVYNAYSALCRKEKKPQSEKKTPSETKSALT 523
Query: 329 DKPGPNPATT 358
P+P T
Sbjct: 524 SSKKPSPLAT 533
>SB_11500| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.3)
Length = 425
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +2
Query: 203 EYKYDNDNKKVKIVRTYKIEKRVVSKSIAK---RKTWSKFGDSASDKPGPNPATTNVAED 373
+Y YD + + + KIEK+ +S+AK W KFG+ PNP T +D
Sbjct: 304 QYIYDYERHQGVCMDPSKIEKKPGLRSVAKMGLNCMWGKFGEQ------PNPQRTEYVDD 357
>SB_10815| Best HMM Match : EGF (HMM E-Value=5.7e-09)
Length = 415
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 230 KVKIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPNPATTNV 364
K I+R Y+ ++ + KR W +FG + K GP +N+
Sbjct: 179 KGPIIRQYRSSLALIGYAGRKRPHWMRFGQNPPSK-GPTTVNSNI 222
>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
Length = 2293
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +2
Query: 143 DQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIA-KRKTWSKFGD 319
D G P V NG VT+ D++ K V T + S+ K+ T S
Sbjct: 717 DAGSASPMGFYVPNGPWGVTKNGGDSNKKAENAVNTTSKATKSEHSSVGIKKVTKSHNNK 776
Query: 320 SASDKPGPNPATTN 361
+SDK GP TN
Sbjct: 777 ESSDKYGPGAEQTN 790
>SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32)
Length = 1077
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 281 SIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEXSQRPDDGELDGLK 445
S A RKT S A+ K G A T+ + KE + D+G++DG K
Sbjct: 859 SKASRKTVSNVAFKAAAKAGAVAAVTSAIVGGAFFYKDMKELKKARDEGKMDGKK 913
>SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +2
Query: 227 KKVKIVRTYKIEKRVVSKSIAK---RKTWSKFGDSASDKPGPNPATTNVAED 373
K +++R Y+IEK +S+AK W KF + PNP T +D
Sbjct: 559 KGYRVIRVYEIEKNPGLRSVAKMGLNCMWEKFVEQ------PNPQRTEYVDD 604
>SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)
Length = 410
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 167 SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWSK 310
S++++N I+ Y+ +N + K+K +RT KI + S+ K W +
Sbjct: 44 SKILQNKETILASYENNNGHIKIKRIRTGKIYR--TSRYFDNDKAWMR 89
>SB_20801| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.46)
Length = 521
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 254 KIEKRV-VSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEXSQRPDDGE 430
K KR + S +KT ++ D +DK P+P+ + D + I + + +
Sbjct: 229 KTSKRPRIGASPVGQKTAARVSDQPTDKSAPSPSGGKTSSDNVLSAIAERLNMKEKTEKS 288
Query: 431 LDG-LKPPSSNVIFK 472
+D L +N+IFK
Sbjct: 289 VDAQLADLVNNLIFK 303
>SB_5605| Best HMM Match : Peptidase_C2 (HMM E-Value=2e-13)
Length = 598
Score = 27.9 bits (59), Expect = 8.4
Identities = 27/100 (27%), Positives = 43/100 (43%)
Frame = +2
Query: 128 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWS 307
DE+ LP ++ VE LKI D+D K K +K+ ++ + + +K S
Sbjct: 101 DEMGHQAAALPLYADAVELCLKIAQSLT-DSDPMKSKF---HKLARQAIERGEHIKKLES 156
Query: 308 KFGDSASDKPGPNPATTNVAEDVFMQFITSKEXSQRPDDG 427
D+P P + NVA+ F+ +S P DG
Sbjct: 157 SV-TLRQDQPAPK--SLNVAKPTFLTDESSTPIPPSPSDG 193
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,970,798
Number of Sequences: 59808
Number of extensions: 344311
Number of successful extensions: 996
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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