Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0479
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50044-2|CAA90354.1|  256|Caenorhabditis elegans Hypothetical pr...    73   1e-13
Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical pr...    35   0.049
Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical pr...    31   0.79 
Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical...    28   5.6  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    27   9.8  

>Z50044-2|CAA90354.1|  256|Caenorhabditis elegans Hypothetical
           protein F22B5.2 protein.
          Length = 256

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
 Frame = +2

Query: 119 SWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRK 298
           SWA+ VE D     P  +   +G +  T +  + D  + K+V  +K+  + V K +A RK
Sbjct: 9   SWAEAVEQDNA---PHIQEGADGTRTETAFT-EVDGVRWKVVTQFKVINKRVPKVVADRK 64

Query: 299 TWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEXSQRPDDGELDGLKPPSSNVIFKCR 478
            W KFG    +  GP  ATT VAE+V MQF  ++   Q  D  E       +S     CR
Sbjct: 65  KWVKFGSCKGEPAGPQVATTYVAEEVDMQFTRNRAGEQILDVQEDKQTAKTTSRE--HCR 122

Query: 479 TCQG-DHLTLYCPFK 520
            C+G DH + +CP+K
Sbjct: 123 HCKGNDHWSTHCPYK 137


>Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical
           protein K07C5.3 protein.
          Length = 493

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 125 ADEVEIDQGVLPPPSEVVE-NGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKT 301
           AD   I +GV P   E+ + NGL  V E  Y+ND +K    +T   + +V   S  K K 
Sbjct: 321 ADASIILKGVHPKAPEIFQSNGLDSVIEKYYNNDFEKSAQQKTSSSKNKVAEPSFKKSKR 380

Query: 302 WSKFGDSASD 331
             +  D  SD
Sbjct: 381 QEESDDEESD 390


>Z78545-3|CAB01767.1|  306|Caenorhabditis elegans Hypothetical
           protein M03B6.4 protein.
          Length = 306

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 242 VRTYKIEKRVVSKSIAKRKTWSKFGDSASDKP----GPNPATTNVAE 370
           +  YKI    +S  + KRKT  KFGD A D P      NP TT+  E
Sbjct: 6   ISQYKINISSLSSPL-KRKTTRKFGDDAYDSPKYFMEGNPTTTSTFE 51


>Z75539-1|CAA99843.1|  672|Caenorhabditis elegans Hypothetical
           protein F28C1.1 protein.
          Length = 672

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +2

Query: 128 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTY-KIEKRVVSKSIAKRKTW 304
           D V+ID+ +    +E+V+   +IVT++    +  +V I+  Y K+ ++   K IA R+ W
Sbjct: 90  DLVDIDEIIPKTKTEIVDEKEQIVTDF----ERYRVLIINDYKKVSEKHYLKKIADREFW 145


>Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical
           protein F02E9.3 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = +2

Query: 128 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAKRKTWS 307
           D +   +    PPS      LK +   K D  +K+ K   + K  KR+ S++I   K WS
Sbjct: 47  DSLRSSKSSSSPPSRNSSLNLKTL---KKDRKSKEGKPKSSSKHGKRMTSRAIHVSKKWS 103

Query: 308 KFGDSASDKPGPNPATTNVAEDV 376
           +F          +  T  + ED+
Sbjct: 104 QFNRREDKTDYLDDETMQILEDL 126


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 170 EVVENGLKIVTEYKYDNDNKKVKIV 244
           + V+   K+V +YKY NDN +V I+
Sbjct: 394 QYVDFAKKLVAQYKYGNDNTRVGII 418


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 170 EVVENGLKIVTEYKYDNDNKKVKIV 244
           + V+   K+V +YKY NDN +V I+
Sbjct: 407 QYVDFAKKLVAQYKYGNDNTRVGII 431


>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
           protein C23H4.6 protein.
          Length = 1137

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +2

Query: 128 DEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRVVSKSIAK----- 292
           DEVE+    +      V+N  KIV + K++    + + +R  K+E  ++ K IAK     
Sbjct: 331 DEVEVQDEEIKESRADVDNLRKIVNDLKHEIKMSESQ-MRRKKVEIMLIRKEIAKAQKQL 389

Query: 293 RKTWSKFG 316
           R+   KFG
Sbjct: 390 REALGKFG 397


>AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical
           protein C35E7.3 protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 499 QMVSLTCTTLKDNIAGWWLKTIKLP 425
           Q V  TC   K  + G  LKTIKLP
Sbjct: 91  QRVQCTCCEYKKELVGCHLKTIKLP 115


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +2

Query: 179 ENGLKIVTEYKYDNDNKKV----KIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPN 346
           +N  K + E K ++ +K +    K V+   +  ++ +K  + +  WSK  +   ++  P 
Sbjct: 165 DNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKPEWSKKKEEKKEESAPE 224

Query: 347 PATTNVAED 373
           P    V E+
Sbjct: 225 PVIEPVEEE 233


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +2

Query: 179 ENGLKIVTEYKYDNDNKKV----KIVRTYKIEKRVVSKSIAKRKTWSKFGDSASDKPGPN 346
           +N  K + E K ++ +K +    K V+   +  ++ +K  + +  WSK  +   ++  P 
Sbjct: 165 DNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKPEWSKKKEEKKEESAPE 224

Query: 347 PATTNVAED 373
           P    V E+
Sbjct: 225 PVIEPVEEE 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,091,020
Number of Sequences: 27780
Number of extensions: 258971
Number of successful extensions: 860
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)