Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0478
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.14 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   7.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.3  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 235 IGIVGELGRPFY---ILLDAVDDMHVLDLHHVTFQFVFS*RAF 116
           +G + E+ R FY   + ++ V +  + D  HVTF+  F  RAF
Sbjct: 145 MGQIREVARHFYHKELQIELVREEILFDTVHVTFKLTFDNRAF 187


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 701 AKNMVISVIGWLWSLQSGSTNKTKPYANLNTVVTIQFDSPQCFK 570
           A  + I     LW L SG  N T+P  +   ++T    + Q  K
Sbjct: 124 ASKLAIDKCDRLWVLDSGLVNNTQPMCS-PKLLTFDLTTSQLLK 166


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 701 AKNMVISVIGWLWSLQSGSTNKTKPYANLNTVVTIQFDSPQCFK 570
           A  + I     LW L SG  N T+P  +   ++T    + Q  K
Sbjct: 124 ASKLAIDKCDRLWVLDSGLVNNTQPMCS-PKLLTFDLTTSQLLK 166


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 701 AKNMVISVIGWLWSLQSGSTNKTKPYANLNTVVTIQFDSPQCFK 570
           A  + I     LW L SG  N T+P  +   ++T    + Q  K
Sbjct: 124 ASKLAIDKCDRLWVLDSGLVNNTQPMCS-PKLLTFDLTTSQLLK 166


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 317 NNYAIAYNCKYDDKKKSHQVFVWILSRNKKL 409
           + + + Y      K KS  + VW LSR ++L
Sbjct: 571 SQFLLEYRGPVTMKGKSEPMNVWFLSREREL 601


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 317 NNYAIAYNCKYDDKKKSHQVFVWILSRNKKL 409
           + + + Y      K KS  + VW LSR ++L
Sbjct: 571 SQFLLEYRGPVTMKGKSEPMNVWFLSREREL 601


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 668 LWSLQSGSTNKTKP 627
           LW L SG  N T+P
Sbjct: 140 LWVLDSGLVNNTQP 153


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 701 AKNMVISVIGWLWSLQSGSTNKTKP 627
           A  + I     LW L SG  N T+P
Sbjct: 128 AYKIAIDKFDRLWILDSGIINNTQP 152


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 668 LWSLQSGSTNKTKP 627
           LW L SG  N+T P
Sbjct: 136 LWVLDSGLVNRTVP 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,811
Number of Sequences: 438
Number of extensions: 3790
Number of successful extensions: 26
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)