Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0477
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)                    29   4.0  
SB_2063| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  

>SB_26933| Best HMM Match : CXC (HMM E-Value=0.0082)
          Length = 842

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 547 NSKRKKCEA*KTTKQALYASHFSLVNIMIY*Y 452
           N+KRKKC+  KT+     A  F L NI I  Y
Sbjct: 398 NAKRKKCKTNKTSSFESGAGEFILANIKIIHY 429


>SB_2063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 294 YTFICNLFAIFYYLVRKKICIFLINYHYINRN 389
           + F+ +L  ++YYLV  K+C +     YI  N
Sbjct: 30  WVFVLHLNGLWYYLVATKLCCYEREKRYIRLN 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,391,466
Number of Sequences: 59808
Number of extensions: 349390
Number of successful extensions: 371
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)