Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0477
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-3|AAP82636.1| 105|Caenorhabditis elegans Set (trithorax/... 31 1.2
U00043-2|AAC77512.1| 242|Caenorhabditis elegans Set (trithorax/... 31 1.2
U23179-4|AAK68209.1| 341|Caenorhabditis elegans Serpentine rece... 29 2.7
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z93377-9|CAE17792.1| 350|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81139-8|CAB03483.2| 361|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z81062-15|CAB02950.2| 361|Caenorhabditis elegans Hypothetical p... 28 6.2
Z82093-6|CAB05014.1| 256|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF000197-3|AAB52898.2| 109|Caenorhabditis elegans Hypothetical ... 28 8.1
AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical ... 28 8.1
AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical ... 28 8.1
>U00043-3|AAP82636.1| 105|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 1, isoform
b protein.
Length = 105
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 375 NDN*LKKYIFFYEPNNKKWRIN 310
ND + Y++F+E NNKKW I+
Sbjct: 15 NDEEIGSYMYFFEHNNKKWCID 36
>U00043-2|AAC77512.1| 242|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 1, isoform
a protein.
Length = 242
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 375 NDN*LKKYIFFYEPNNKKWRIN 310
ND + Y++F+E NNKKW I+
Sbjct: 152 NDEEIGSYMYFFEHNNKKWCID 173
>U23179-4|AAK68209.1| 341|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 3 protein.
Length = 341
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 318 AIFYYLVRKKICIFLINYHYINRNLAGXGLIH*ICVLKFSMKLC 449
A+ Y++ RK IF +++H NL +++ IC L FSM LC
Sbjct: 38 ALIYFITRK---IFFLHFH---GNLKCLLIVYFICNLLFSMALC 75
>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
protein W08D2.5 protein.
Length = 1256
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 292 ITPLYVIYSPFFIIWFVKKYVFF*SIIIILT 384
ITP YV +W+ +Y ++ S+I+IL+
Sbjct: 188 ITPFYVFQIFSVTVWYNDEYAYYASLIVILS 218
>Z93377-9|CAE17792.1| 350|Caenorhabditis elegans Hypothetical
protein F13A7.13 protein.
Length = 350
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 297 TFICNLFAIFYYLVRKKICIFLINYH 374
TF LF+ + + RKK+ IFLI YH
Sbjct: 149 TFATVLFSDYESIYRKKLSIFLIIYH 174
>Z81139-8|CAB03483.2| 361|Caenorhabditis elegans Hypothetical
protein W05H5.7 protein.
Length = 361
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 282 VYFYYTFIC-NLFAIFYYLVRKKICIFLINYHYIN 383
V+FY F+ +FA+ + LV C F+ N+ ++N
Sbjct: 260 VFFYVAFVSFGMFALAFDLVSSAYCHFVENFLFLN 294
>Z81062-15|CAB02950.2| 361|Caenorhabditis elegans Hypothetical
protein W05H5.7 protein.
Length = 361
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 282 VYFYYTFIC-NLFAIFYYLVRKKICIFLINYHYIN 383
V+FY F+ +FA+ + LV C F+ N+ ++N
Sbjct: 260 VFFYVAFVSFGMFALAFDLVSSAYCHFVENFLFLN 294
>Z82093-6|CAB05014.1| 256|Caenorhabditis elegans Hypothetical
protein ZK39.7 protein.
Length = 256
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 285 YFYYTFICNLFAIFYYLVRKKICIFLINYH-YINRNLAG 398
Y Y FICN FAI Y+ + I +H I+ +++G
Sbjct: 218 YAYMNFICNPFAILYFSTQLGFSIRSQTFHKCIHEHVSG 256
>AF000197-3|AAB52898.2| 109|Caenorhabditis elegans Hypothetical
protein T21G5.2 protein.
Length = 109
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 699 FSQNISVN*KLFKCYYYIILLRYKIFNLFY 610
FS +IS+N LFKC +I L+++ IF +
Sbjct: 15 FSTSISINSPLFKC-SFIFLIQFVIFTYIH 43
>AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2b protein.
Length = 1111
Score = 27.9 bits (59), Expect = 8.1
Identities = 7/31 (22%), Positives = 21/31 (67%)
Frame = +1
Query: 292 ITPLYVIYSPFFIIWFVKKYVFF*SIIIILT 384
++P Y+ + +W++ YV++ ++II+++
Sbjct: 203 LSPFYIFQAISVTVWYIDDYVWYAALIIVMS 233
>AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2a protein.
Length = 1127
Score = 27.9 bits (59), Expect = 8.1
Identities = 7/31 (22%), Positives = 21/31 (67%)
Frame = +1
Query: 292 ITPLYVIYSPFFIIWFVKKYVFF*SIIIILT 384
++P Y+ + +W++ YV++ ++II+++
Sbjct: 219 LSPFYIFQAISVTVWYIDDYVWYAALIIVMS 249
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,486
Number of Sequences: 27780
Number of extensions: 300482
Number of successful extensions: 527
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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