Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0477
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.57 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   7.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   7.1  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 279 CFLNFTFTTYNGDGEHL*IYIPKNF 205
           C + F   T+NGD   L +Y  KNF
Sbjct: 165 CIMKFGSWTFNGDQVSLALYNNKNF 189


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 562 YDINLVTNMYNNNDY 606
           Y  N   N YNNN+Y
Sbjct: 94  YKYNYNNNNYNNNNY 108


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 562 YDINLVTNMYNNNDY 606
           Y  N   N YNNN+Y
Sbjct: 94  YKYNYNNNNYNNNNY 108


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 562 YDINLVTNMYNNNDY 606
           Y  N   N YNNN+Y
Sbjct: 329 YKYNYNNNNYNNNNY 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,647
Number of Sequences: 438
Number of extensions: 3895
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)