Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0476
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 279 2e-76
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 266 2e-72
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 30 0.31
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 30 0.40
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 29 0.54
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 2.9
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 3.8
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 27 3.8
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 5.0
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 5.0
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 6.6
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 6.6
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 25 8.7
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 279 bits (685), Expect = 2e-76
Identities = 136/214 (63%), Positives = 167/214 (78%), Gaps = 2/214 (0%)
Frame = +3
Query: 114 STRXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWR 293
++R + V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SWR
Sbjct: 4 TSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASWR 63
Query: 294 VISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFY 467
++SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L+KHLIP A++ ESKVFY
Sbjct: 64 IVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVFY 123
Query: 468 LKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISXAKMQPTHPIXLGLALNFSXFY 647
KMKGDYYRYLAE A GE R + S + Y+ A EI+ A++ PTHPI LGLALNFS FY
Sbjct: 124 YKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVFY 183
Query: 648 YEILNSPDKACQLAKQAFDDAIAELDTLNEXSYK 749
YEILNSPD+AC LAKQAFD+AI+ELD+L+E SYK
Sbjct: 184 YEILNSPDRACYLAKQAFDEAISELDSLSEESYK 217
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 266 bits (652), Expect = 2e-72
Identities = 130/214 (60%), Positives = 164/214 (76%), Gaps = 2/214 (0%)
Frame = +3
Query: 114 STRXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWR 293
++R V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+SWR
Sbjct: 3 NSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRASWR 62
Query: 294 VISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFY 467
+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L+KHLIP A+ ESKVFY
Sbjct: 63 IISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFY 122
Query: 468 LKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISXAKMQPTHPIXLGLALNFSXFY 647
KMKGDYYRYLAE GE + S +AY+ A +I+ A++ PT P+ LGLALNFS FY
Sbjct: 123 YKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFY 182
Query: 648 YEILNSPDKACQLAKQAFDDAIAELDTLNEXSYK 749
YEIL+SP+ AC LAKQ FD+AI+ELD+L+E SYK
Sbjct: 183 YEILDSPESACHLAKQVFDEAISELDSLSEESYK 216
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 30.3 bits (65), Expect = 0.31
Identities = 20/94 (21%), Positives = 38/94 (40%)
Frame = +3
Query: 114 STRXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWR 293
S E + R + + Y+ MA + E E ++ + LLS Y N +R
Sbjct: 3007 SAYGEELMRERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDNEAYQAELFYR 3066
Query: 294 VISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 395
+ + +E+ + EY +E+ L++ C
Sbjct: 3067 LSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 29.9 bits (64), Expect = 0.40
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +3
Query: 135 QRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARRSSWRVIS 302
++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V S+W S
Sbjct: 11 EQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREFSTWATFS 68
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 29.5 bits (63), Expect = 0.54
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Frame = +3
Query: 240 LLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYR-VKVEKELR-EICYDVLGL 413
L+S +N A RS + + I + S + ++ + YR VK K L +IC+ +
Sbjct: 968 LVSYVRRNAETAERS--QALPFITRNL-ASIKSHELHEAYRLVKANKILEAQICFRSIIY 1024
Query: 414 LDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATG-ETRHSVVEDSQKAYQDAFEISXAK 590
L L A++ E + + RY+ ++ E R ED+++A + ++ + A
Sbjct: 1025 LA--LTTVANSEEEADEISALIDECCRYIVALSCELERRRLGEEDTKRALELSYYFASAD 1082
Query: 591 MQPTHP-IXLGLALNFS 638
+QP H I L LA+N S
Sbjct: 1083 LQPMHSIIALRLAINAS 1099
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 411 LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 548
+++K IP++ E+K Y + GD+ +L E A E H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 258 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 374
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +3
Query: 309 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 485
E E+ Q++A+ Y+V + +LRE YD LG + +P A ++ F+ + GD
Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99
Query: 486 YYR-YLAEV 509
+R Y+ E+
Sbjct: 100 SFRDYVGEL 108
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 5.0
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = +3
Query: 120 RXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 299
+ E QR + Q R D M + +G S+ + SV+ + +R S+
Sbjct: 321 KQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSHH 375
Query: 300 SSIEQKTEGSE---RKQQMAKEYRVKVEKELR 386
S E + E SE R+Q++ +E R + EK+LR
Sbjct: 376 SESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 312 QKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 437
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 54 FSPSDK-GISELVLFHRPRCPSTRXELVQRAKLAEQAERYDDMAAAMKEVTE 206
FSP +K + +L LFH + PS++ + + + DD A V+E
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSNSNSSDTSTDDQAYLNVSVSE 213
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 246 SVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKE 380
S +Y + G S W+ I ++ K+ G +R ++ Y +KE
Sbjct: 61 SFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYYSERYHSFRDKE 105
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 330 ERKQQMAKEYRVKVEKELREICYDV--LGLLDKHLIPKASNPE 452
E++Q A +YR+KVE+ +I V + L+ L + SNPE
Sbjct: 85 EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,990
Number of Sequences: 5004
Number of extensions: 57231
Number of successful extensions: 183
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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