Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0476
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.) 248 3e-66
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0) 244 6e-65
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.) 162 3e-40
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44) 141 6e-34
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 2e-16
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 32 0.43
SB_33101| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34) 28 7.0
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 28 7.0
SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10) 28 9.3
>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 248 bits (608), Expect = 3e-66
Identities = 126/193 (65%), Positives = 143/193 (74%), Gaps = 2/193 (1%)
Frame = +3
Query: 177 MAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKE 356
MA AMKE TE L EERNLLSVAYKNVVGA+RSSWRVISSIEQK EGSERK+Q +
Sbjct: 1 MAKAMKEATEISETLEQEERNLLSVAYKNVVGAKRSSWRVISSIEQKLEGSERKKQNTET 60
Query: 357 YRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSV 536
YR +E EL E+C VL LL+ LIP A + ESKVFYLKMKGDYYRY EVA + R V
Sbjct: 61 YRQTIENELNEVCETVLKLLESKLIPNAQSTESKVFYLKMKGDYYRYEGEVAGADRRREV 120
Query: 537 VEDSQKAYQDAFEIS--XAKMQPTHPIXLGLALNFSXFYYEILNSPDKACQLAKQAFDDA 710
V+ + KAY +A EI+ K+ PT PI LGLALNFS FYYEI+ +AC LAK+AFDDA
Sbjct: 121 VQKAMKAYSEAQEIAEKDPKLPPTDPIRLGLALNFSVFYYEIVEDSKQACDLAKKAFDDA 180
Query: 711 IAELDTLNEXSYK 749
IAELDTL+E YK
Sbjct: 181 IAELDTLSEDQYK 193
Score = 90.2 bits (214), Expect = 2e-18
Identities = 45/76 (59%), Positives = 58/76 (76%), Gaps = 3/76 (3%)
Frame = +3
Query: 531 SVVEDSQKAYQDAFEISXA---KMQPTHPIXLGLALNFSXFYYEILNSPDKACQLAKQAF 701
+VVE + +AY++A E + K+ PT PI LGLALNFS F+YEI + ++AC+LAKQAF
Sbjct: 207 TVVEKALQAYKEAKEAAETGDGKLAPTDPIRLGLALNFSVFHYEIQENQEEACKLAKQAF 266
Query: 702 DDAIAELDTLNEXSYK 749
DDAIAELD+LNE YK
Sbjct: 267 DDAIAELDSLNEDQYK 282
>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
Length = 248
Score = 244 bits (597), Expect = 6e-65
Identities = 124/214 (57%), Positives = 155/214 (72%), Gaps = 3/214 (1%)
Frame = +3
Query: 117 TRXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 296
+R EL+ AK+AEQAERYDDM AM VT+ G L++EERNLLSVAYKNVVGARRSSWRV
Sbjct: 10 SREELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLNDEERNLLSVAYKNVVGARRSSWRV 69
Query: 297 ISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKAS---NPESKVFY 467
ISS+EQK E + K+YR + EL C +VL +L+ +L+ N E+KVFY
Sbjct: 70 ISSMEQK--APEEMAALTKKYREDITNELNGKCAEVLDILENYLLKDGQDDINTEAKVFY 127
Query: 468 LKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISXAKMQPTHPIXLGLALNFSXFY 647
LKM+GDY+RYL EVA G++R +E S++AY+DA ++ P+HPI LGLALNFS FY
Sbjct: 128 LKMRGDYHRYLVEVAEGDSRKENIEKSREAYKDA-SAKAEELSPSHPIRLGLALNFSVFY 186
Query: 648 YEILNSPDKACQLAKQAFDDAIAELDTLNEXSYK 749
YEI N P +AC+LAK+AFDDAIA LD L + SYK
Sbjct: 187 YEIENKPPEACKLAKEAFDDAIAVLDNLKDESYK 220
>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 162 bits (393), Expect = 3e-40
Identities = 79/134 (58%), Positives = 104/134 (77%)
Frame = +3
Query: 120 RXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 299
R L+ AKL+EQ +RYD+MA MKEV+E +LS EERNLLSV+YKN+VG RRSSWRVI
Sbjct: 84 RETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLSKEERNLLSVSYKNIVGQRRSSWRVI 143
Query: 300 SSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMK 479
SSIE+KT S + K+Y+ +EKEL+++C +VLG+L++ LIP A + E+KVFY K+K
Sbjct: 144 SSIEEKTAESS-SLAIVKKYKACIEKELKDLCKEVLGILER-LIPGAEDEENKVFYFKLK 201
Query: 480 GDYYRYLAEVATGE 521
GDYYRYLAE + G+
Sbjct: 202 GDYYRYLAEFSHGQ 215
>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
Length = 251
Score = 141 bits (341), Expect = 6e-34
Identities = 72/122 (59%), Positives = 91/122 (74%), Gaps = 3/122 (2%)
Frame = +3
Query: 120 RXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 299
+ E V AKLAEQAERYDDM +MKEV + G ELS E+RNLLSVAYKNV+GARR+SWR+I
Sbjct: 4 KEEHVYMAKLAEQAERYDDMVNSMKEVAKMGTELSTEDRNLLSVAYKNVIGARRASWRII 63
Query: 300 SSIEQKTE--GSE-RKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYL 470
+SIEQK E G + K +M + YR +E+EL+ IC ++L LLD LI + + ESKVFY
Sbjct: 64 TSIEQKEESKGEDMAKLEMIRNYRKTIEEELKTICGEILSLLDDSLIKNSQSEESKVFYN 123
Query: 471 KM 476
K+
Sbjct: 124 KI 125
>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 83.4 bits (197), Expect = 2e-16
Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Frame = +3
Query: 117 TRXELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 296
+R ELVQ AKLAEQ ER++D+ MK+ E L+ E RNLLSV YKNVVG++R +WR
Sbjct: 189 SRNELVQLAKLAEQTERFEDVILYMKKAIEINPSLNKEHRNLLSVGYKNVVGSKRFAWRH 248
Query: 297 ISSIEQKTEGSERKQQMAK--EYRVKVEKELREICYDVL 407
+ ++ R Q+ +Y+ K+E EL+ +C ++L
Sbjct: 249 LHHDALQSGRYIRDSQLKGIIKYKEKIEMELKTLCREIL 287
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 32.3 bits (70), Expect = 0.43
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +3
Query: 141 AKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKT 320
AK ++ ER + A K+ E + EE++ L K R+ + + IE+K
Sbjct: 346 AKQKKEQERLEKQAEKEKKEKERLEKKQREEKDRLEKKEKKEEEKRKKEEEINAKIEEKK 405
Query: 321 EGSERKQQMAKEYRVKVEK 377
+ E+K+Q +E K E+
Sbjct: 406 KREEKKKQEEEEKMKKKEQ 424
>SB_33101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +3
Query: 87 VLFHRPRCPSTRXELVQRAKLAEQAERYDDMAAAMKEVT-ETGVELSNEERNLLSVAYK 260
V F P CP TR R +A Y A MK + + G ELS E+ + A K
Sbjct: 314 VYFTTPPCPGTRATKPFRENIAALVVFYTPSKADMKAILHDYGAELSEEKMKVYMKALK 372
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 29.1 bits (62), Expect = 4.0
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 6/112 (5%)
Frame = +3
Query: 129 LVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGAR------RSSW 290
L + K A +R +A+A+ + + + LS K VV + + W
Sbjct: 282 LSEMFKQAVTEDRPKMLASAITKALNQDIHSPSALNLPLSTPAKQVVKTKWDRIREKHQW 341
Query: 291 RVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASN 446
++S E+ +ER++Q E +VK E++ R+ ++ + HL K SN
Sbjct: 342 NLLSEDEKNKIKAERRKQKRLELKVKREEKERKRLEELKRVSFAHLGMKLSN 393
>SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
Length = 512
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +3
Query: 138 RAKLAEQAERYDDMAAAM-KEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQ 314
+ K+ +++E+YD + + KE T+ G + E + N AR + ++ +
Sbjct: 13 KRKIFKKSEKYDRLEEPLEKEGTDGGEIEAEAEVEPHTEEEANYNEARSENCEKNNNNDS 72
Query: 315 KTEGSERKQQMAKEYRVKVEKELRE 389
T ++ +Q KE+ V +EK+L++
Sbjct: 73 STPDAKSQQADIKEWIVSLEKQLKD 97
>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1126
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 291 RVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 395
R++ IE+K E E ++ AKE + + E+E + IC
Sbjct: 919 RIMKEIEEK-EKKEEAERKAKEEKEREERERKRIC 952
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 336 KQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 437
K++M ++Y K+EKE+ Y+++ L K ++ K
Sbjct: 292 KEEMKEKYDGKIEKEMSGAIYEIISRLMKAVVGK 325
>SB_10602| Best HMM Match : RVT_1 (HMM E-Value=1.3e-10)
Length = 416
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +3
Query: 402 VLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEIS 581
+LGL++ H+ PK+ + ++F +Y+ +L V T+ +E + Y + S
Sbjct: 116 ILGLIESHIDPKSFH--HRMFLAACCLEYFGFLRSVEFTVTQEKCIEQNMPLYAVFIDFS 173
Query: 582 XA 587
A
Sbjct: 174 KA 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,570,781
Number of Sequences: 59808
Number of extensions: 434921
Number of successful extensions: 1181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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