Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0475
         (422 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             188   2e-48
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                36   0.018
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   27   8.5  
SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)         27   8.5  
SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   8.5  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  188 bits (457), Expect = 2e-48
 Identities = 85/98 (86%), Positives = 92/98 (93%)
 Frame = +2

Query: 29  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 208
           MT+KR NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIVEAAAVRDI DASVY 
Sbjct: 1   MTKKRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYE 60

Query: 209 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 322
           ++ LPKLY KLHYCVSCAIHSKVVRNRSK+DR+IRTPP
Sbjct: 61  VYALPKLYVKLHYCVSCAIHSKVVRNRSKEDRKIRTPP 98


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 35.5 bits (78), Expect = 0.018
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +2

Query: 104 CAR-CVPKDKAIKKFVIRNIVEAAAVRD--INDASVYPMFQLPKLYAKLHYC--VS--CA 262
           C R C+ +D+ I  FVI     AAAVRD  + D ++Y      +       C  VS  C 
Sbjct: 664 CERDCIMRDRTICDFVICG--RAAAVRDCIMRDRAIYNCVMSDRFIRDCVMCDRVSRDCL 721

Query: 263 IHSKVVRNRSKKDRRIR 313
           IH +VVR+   +DR IR
Sbjct: 722 IHDRVVRDCVMRDRVIR 738


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 29   MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 208
            M  ++ N    K+ R     +  TNC      +K   K   +NI+   +  D  D+S+YP
Sbjct: 1819 MLYRQNNWYYIKNSRNTEGFIPFTNCIAEDEYEKRQNKLSRQNIIRNTSFLDSMDSSIYP 1878


>SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)
          Length = 558

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
 Frame = -2

Query: 211 HWVYRGIVN------ISDRRRFYDVPNHELFDGLVLWH-APRAVCA 95
           H+  RGI N      +S+RR+F  V N E  D +VL H  P+A C+
Sbjct: 441 HYGIRGIANEWFSSYLSNRRQFVSVNNSE-SDEVVLTHGVPQAKCS 485


>SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 842

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 116 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 229
           + K K  +  VI   + A AV D++  +VYP+F  P L
Sbjct: 47  IVKKKRNEGKVIYLFIGALAVTDVSLLAVYPLFAFPVL 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,269,029
Number of Sequences: 59808
Number of extensions: 207776
Number of successful extensions: 537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)