Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0475
         (422 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal prot...   195   2e-50
X13625-1|CAB38441.1|  114|Drosophila melanogaster protein ( Dros...   195   2e-50
AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p pro...   195   2e-50
AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-P...   195   2e-50
AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-P...   195   2e-50
AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-P...   195   2e-50
J03138-1|AAA28724.1| 1095|Drosophila melanogaster protein ( D.me...    29   1.9  
BT003293-1|AAO25053.1| 1095|Drosophila melanogaster GH28834p pro...    29   1.9  
AF181641-1|AAD55427.1| 1095|Drosophila melanogaster norpA protein.     29   1.9  
AE014298-627|AAN09121.1| 1095|Drosophila melanogaster CG3620-PB,...    29   1.9  
AE014298-626|AAF45942.2| 1095|Drosophila melanogaster CG3620-PA,...    29   1.9  
AE014298-625|AAX52475.1| 1095|Drosophila melanogaster CG3620-PD,...    29   1.9  
AE014298-624|AAX52474.1| 1095|Drosophila melanogaster CG3620-PC,...    29   1.9  
AY070900-1|AAL48522.1|  463|Drosophila melanogaster RE01590p pro...    29   3.4  
AE014134-1736|AAF52836.1|  463|Drosophila melanogaster CG13126-P...    29   3.4  
AY061244-1|AAL28792.1|  664|Drosophila melanogaster LD18373p pro...    28   5.9  
AE014298-1641|AAF48061.1|  664|Drosophila melanogaster CG11696-P...    28   5.9  

>X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal protein
           S31 protein.
          Length = 114

 Score =  195 bits (475), Expect = 2e-50
 Identities = 88/108 (81%), Positives = 98/108 (90%)
 Frame = +2

Query: 29  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 208
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 209 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 352
            + LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>X13625-1|CAB38441.1|  114|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for putative ribosomal
           protein S31. ).
          Length = 114

 Score =  195 bits (475), Expect = 2e-50
 Identities = 88/108 (81%), Positives = 98/108 (90%)
 Frame = +2

Query: 29  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 208
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 209 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 352
            + LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p
           protein.
          Length = 114

 Score =  195 bits (475), Expect = 2e-50
 Identities = 88/108 (81%), Positives = 98/108 (90%)
 Frame = +2

Query: 29  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 208
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 209 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 352
            + LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-PC,
           isoform C protein.
          Length = 114

 Score =  195 bits (475), Expect = 2e-50
 Identities = 88/108 (81%), Positives = 98/108 (90%)
 Frame = +2

Query: 29  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 208
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 209 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 352
            + LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-PB,
           isoform B protein.
          Length = 114

 Score =  195 bits (475), Expect = 2e-50
 Identities = 88/108 (81%), Positives = 98/108 (90%)
 Frame = +2

Query: 29  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 208
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 209 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 352
            + LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-PA,
           isoform A protein.
          Length = 114

 Score =  195 bits (475), Expect = 2e-50
 Identities = 88/108 (81%), Positives = 98/108 (90%)
 Frame = +2

Query: 29  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 208
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 209 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 352
            + LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>J03138-1|AAA28724.1| 1095|Drosophila melanogaster protein (
            D.melanogaster phospholipaseC (norpA) mRNA, complete cds.
            ).
          Length = 1095

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 161  VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPKSNFP 337
            V+AA ++ + D     +  L    AK+    +  + + K ++ +++KDRR+R   ++N  
Sbjct: 977  VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036

Query: 338  RDMSRPQAV 364
            R M   + +
Sbjct: 1037 RFMEEKKQI 1045


>BT003293-1|AAO25053.1| 1095|Drosophila melanogaster GH28834p protein.
          Length = 1095

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 161  VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPKSNFP 337
            V+AA ++ + D     +  L    AK+    +  + + K ++ +++KDRR+R   ++N  
Sbjct: 977  VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036

Query: 338  RDMSRPQAV 364
            R M   + +
Sbjct: 1037 RFMEEKKQI 1045


>AF181641-1|AAD55427.1| 1095|Drosophila melanogaster norpA protein.
          Length = 1095

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 161  VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPKSNFP 337
            V+AA ++ + D     +  L    AK+    +  + + K ++ +++KDRR+R   ++N  
Sbjct: 977  VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036

Query: 338  RDMSRPQAV 364
            R M   + +
Sbjct: 1037 RFMEEKKQI 1045


>AE014298-627|AAN09121.1| 1095|Drosophila melanogaster CG3620-PB,
            isoform B protein.
          Length = 1095

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 161  VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPKSNFP 337
            V+AA ++ + D     +  L    AK+    +  + + K ++ +++KDRR+R   ++N  
Sbjct: 977  VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036

Query: 338  RDMSRPQAV 364
            R M   + +
Sbjct: 1037 RFMEEKKQI 1045


>AE014298-626|AAF45942.2| 1095|Drosophila melanogaster CG3620-PA,
            isoform A protein.
          Length = 1095

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 161  VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPKSNFP 337
            V+AA ++ + D     +  L    AK+    +  + + K ++ +++KDRR+R   ++N  
Sbjct: 977  VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036

Query: 338  RDMSRPQAV 364
            R M   + +
Sbjct: 1037 RFMEEKKQI 1045


>AE014298-625|AAX52475.1| 1095|Drosophila melanogaster CG3620-PD,
            isoform D protein.
          Length = 1095

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 161  VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPKSNFP 337
            V+AA ++ + D     +  L    AK+    +  + + K ++ +++KDRR+R   ++N  
Sbjct: 977  VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036

Query: 338  RDMSRPQAV 364
            R M   + +
Sbjct: 1037 RFMEEKKQI 1045


>AE014298-624|AAX52474.1| 1095|Drosophila melanogaster CG3620-PC,
            isoform C protein.
          Length = 1095

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 161  VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPKSNFP 337
            V+AA ++ + D     +  L    AK+    +  + + K ++ +++KDRR+R   ++N  
Sbjct: 977  VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036

Query: 338  RDMSRPQAV 364
            R M   + +
Sbjct: 1037 RFMEEKKQI 1045


>AY070900-1|AAL48522.1|  463|Drosophila melanogaster RE01590p
           protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 116 RTARSLCISRL*RDHVHAWRVLHYGAYES 30
           R  R L I++     ++AW+ + YGAYES
Sbjct: 131 RRKRELEINKRLGQRIYAWKRIEYGAYES 159


>AE014134-1736|AAF52836.1|  463|Drosophila melanogaster CG13126-PA
           protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 116 RTARSLCISRL*RDHVHAWRVLHYGAYES 30
           R  R L I++     ++AW+ + YGAYES
Sbjct: 131 RRKRELEINKRLGQRIYAWKRIEYGAYES 159


>AY061244-1|AAL28792.1|  664|Drosophila melanogaster LD18373p
           protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 56  RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRN 157
           +A H  G V  V+CT C R +  +++++K + R+
Sbjct: 465 KALHPDGPVAEVQCTLCGRWLRDERSLRKHLARH 498


>AE014298-1641|AAF48061.1|  664|Drosophila melanogaster CG11696-PA
           protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 56  RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRN 157
           +A H  G V  V+CT C R +  +++++K + R+
Sbjct: 465 KALHPDGPVAEVQCTLCGRWLRDERSLRKHLARH 498


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,352,662
Number of Sequences: 53049
Number of extensions: 311643
Number of successful extensions: 1004
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1292733852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)