Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0475
         (422 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...   161   1e-40
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)           158   1e-39
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)           158   1e-39
At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase, puta...    28   2.3  
At3g60200.1 68416.m06726 expressed protein hypothetical proteins...    28   3.0  
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r...    27   5.2  
At5g58440.1 68418.m07319 phox (PX) domain-containing protein sim...    26   9.1  

>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score =  161 bits (392), Expect = 1e-40
 Identities = 72/113 (63%), Positives = 86/113 (76%)
 Frame = +2

Query: 29  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 208
           MT KRRNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 209 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 367
            + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQ 113


>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 
          Length = 131

 Score =  158 bits (384), Expect = 1e-39
 Identities = 71/113 (62%), Positives = 85/113 (75%)
 Frame = +2

Query: 29  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 208
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 209 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 367
            + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQ 113


>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
          Length = 133

 Score =  158 bits (384), Expect = 1e-39
 Identities = 71/113 (62%), Positives = 85/113 (75%)
 Frame = +2

Query: 29  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 208
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 209 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 367
            + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQ 113


>At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase GB:AAF26356
           [GI:6715257][Phaseolus vulgaris]
          Length = 599

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 239 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAV 364
           L YC S  + S+V R  +     + TPP  +FP+  S   A+
Sbjct: 32  LSYCSSLPMASRVTRKLNVSSA-LHTPPALHFPKQSSNSPAI 72


>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
           At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
          Length = 305

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 239 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 370
           L    S A+ + V  N+SKK      PP   FPR +S P   +R
Sbjct: 26  LSLAASAAVSAAVEDNQSKKSNNNNHPPLLIFPRSVS-PYVTRR 68


>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 86  AVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 229
           ++ C  C   VP+    +K  +       AVRD+ + ++ P F +P L
Sbjct: 572 SILCDRCEEIVPEISLARKIFV------CAVRDVFEGALLPTFDVPDL 613


>At5g58440.1 68418.m07319 phox (PX) domain-containing protein
           similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
           contains Pfam profile PF00787: PX domain
          Length = 587

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3

Query: 69  DVVTLKP*DAQTARGACQRTRPSKS 143
           DVVTL    A+T RG C   RP KS
Sbjct: 204 DVVTLADRLAETYRGFCIPPRPDKS 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,713,408
Number of Sequences: 28952
Number of extensions: 138214
Number of successful extensions: 356
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)