Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0474
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       177   5e-45
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       177   5e-45
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                       126   2e-29

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  177 bits (432), Expect = 5e-45
 Identities = 90/208 (43%), Positives = 121/208 (58%), Gaps = 2/208 (0%)
 Frame = +2

Query: 5   LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*T 184
           L+LQ+ A P++E+                             K   R+L++G ++E+I T
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 185 IIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIP 358
           IIPA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFDSY++P
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVP 134

Query: 359 SNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTNF 538
           + ++   +FRLL+VD               TA DVIHS  +P+L VK+DA PGRLNQT F
Sbjct: 135 TTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGF 194

Query: 539 FINRPGIFFGQCSEICGANHSFIPIVIE 622
           FI RPG+F+GQCSEICGANHSF+PIVIE
Sbjct: 195 FIKRPGVFYGQCSEICGANHSFMPIVIE 222


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  177 bits (432), Expect = 5e-45
 Identities = 90/208 (43%), Positives = 121/208 (58%), Gaps = 2/208 (0%)
 Frame = +2

Query: 5   LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*T 184
           L+LQ+ A P++E+                             K   R+L++G ++E+I T
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 185 IIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIP 358
           IIPA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFDSY++P
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVP 134

Query: 359 SNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTNF 538
           + ++   +FRLL+VD               TA DVIHS  +P+L VK+DA PGRLNQT F
Sbjct: 135 TTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGF 194

Query: 539 FINRPGIFFGQCSEICGANHSFIPIVIE 622
           FI RPG+F+GQCSEICGANHSF+PIVIE
Sbjct: 195 FIKRPGVFYGQCSEICGANHSFMPIVIE 222


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score =  126 bits (304), Expect = 2e-29
 Identities = 69/188 (36%), Positives = 98/188 (52%), Gaps = 2/188 (1%)
 Frame = +2

Query: 5   LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*T 184
           L+LQ+ A P++E+                             K   R+L++G ++E+I T
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 185 IIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIP 358
           IIPA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFDSY++P
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVP 134

Query: 359 SNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTNF 538
           + ++   +FRLL+VD               TA DVIHS  +P+L VK+DA PGRLNQT F
Sbjct: 135 TTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGF 194

Query: 539 FINRPGIF 562
           FI +   F
Sbjct: 195 FIKKTWSF 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,803,579
Number of Sequences: 59808
Number of extensions: 197234
Number of successful extensions: 325
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)