Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0473
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q75C93 Cluster: ACR023Wp; n=1; Eremothecium gossypii|Re...    37   0.61 
UniRef50_A6FWX5 Cluster: Putative uncharacterized protein; n=1; ...    33   5.7  
UniRef50_A5NWR2 Cluster: Putative uncharacterized protein; n=2; ...    33   5.7  
UniRef50_Q01ZQ0 Cluster: Putative uncharacterized protein precur...    33   7.5  
UniRef50_A5E015 Cluster: Putative uncharacterized protein; n=1; ...    33   7.5  

>UniRef50_Q75C93 Cluster: ACR023Wp; n=1; Eremothecium gossypii|Rep:
           ACR023Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 769

 Score = 36.7 bits (81), Expect = 0.61
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 5   PRPSDPKPTSPARGAPCRPTNEALARRGRH 94
           P P DP+PTSPA+ A  RP++ +L   G H
Sbjct: 550 PPPGDPQPTSPAQNATRRPSDASLGYPGSH 579


>UniRef50_A6FWX5 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 535

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 21/43 (48%), Positives = 23/43 (53%)
 Frame = -1

Query: 129 PESSTM*ATVVP*RPRLARASFVGRQGAPRAGEVGFGSEGLGS 1
           P S T+ A VVP  P L+ A F G   APR G VG    G GS
Sbjct: 2   PRSYTVKARVVPTEPGLSVARFTGL--APRRGNVGLALSGGGS 42


>UniRef50_A5NWR2 Cluster: Putative uncharacterized protein; n=2;
           Methylobacterium sp. 4-46|Rep: Putative uncharacterized
           protein - Methylobacterium sp. 4-46
          Length = 206

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 2   LPRPSDPKPTSPARGAPCRPTNEA--LARRGRHGTTVAYIVDDSGS 133
           LPRPS   PT P R  P  P   A  LARR  H    ++++ + GS
Sbjct: 142 LPRPSAATPTKPERPPPRTPAPSAPQLARRD-HPAEASFLIGEKGS 186


>UniRef50_Q01ZQ0 Cluster: Putative uncharacterized protein
           precursor; n=1; Solibacter usitatus Ellin6076|Rep:
           Putative uncharacterized protein precursor - Solibacter
           usitatus (strain Ellin6076)
          Length = 697

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 8   RPSDPKPTSPARGAPCRPTNEALARRGRHGTTVAYIVDDSG 130
           R +  KP +P +G P  P+    AR  +   TVA +VDD G
Sbjct: 79  RATSAKPAAPVKGVPPPPSPPMAARPKQIRRTVALVVDDLG 119


>UniRef50_A5E015 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 382

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 608 DVSSIKSYTFTXNLTYSYELSNE-SPHQNPRLSWNRTHNNETV 483
           D+ SI+S T T  ++ +YEL    S H NP L+W    N++ V
Sbjct: 35  DLQSIESSTATGAISINYELIKAISLHANPNLAWCSQQNSQIV 77


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,085,334
Number of Sequences: 1657284
Number of extensions: 12288749
Number of successful extensions: 32614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32504
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)