Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0473
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   5.0  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   8.7  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    25   8.7  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 288 KALGVDFILIVIICVNVSPKYGSDTLINL 374
           K LG+DF + +++C     +YGS+ L +L
Sbjct: 147 KELGIDFPVNLLMCFEGMEEYGSEGLEDL 175


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 2   LPRPSDPKPTSPARGAPCRPTNEALARR 85
           + +  +P P S A  +P + + EALA R
Sbjct: 59  IQKKKEPSPASSASASPVKKSAEALAER 86


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 610 LTYRVLSPIHSPLI*LTATSYRMSRLIKIHVYHGIAP 500
           +T   L+P   PLI  T  + R ++   +H+Y+  +P
Sbjct: 112 VTISALTPSREPLILRTIEALRGAKNATVHLYNACSP 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,090
Number of Sequences: 5004
Number of extensions: 54055
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)