BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0473 (750 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st... 28 6.2 >U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin structural genes (yolk protein genes) protein 1 protein. Length = 1616 Score = 28.3 bits (60), Expect = 6.2 Identities = 16/59 (27%), Positives = 26/59 (44%) Frame = -2 Query: 677 LCAN*KCFTTEVFLKYCERYRVFDVSSIKSYTFTXNLTYSYELSNESPHQNPRLSWNRT 501 L N +C E L + YR +D +S ++ TY YE N + Q + S ++ Sbjct: 1472 LLKNEECEAEEERLSEKKNYRKYDERKYESEEYSFEETYDYEQENTNKKQKNQRSQKKS 1530 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,323,635 Number of Sequences: 27780 Number of extensions: 290080 Number of successful extensions: 658 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 636 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 658 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1777507862 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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