Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0472
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                47   2e-05
SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)                       38   0.011
SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                33   0.19 
SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 32   0.43 
SB_6723| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.76 

>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/59 (38%), Positives = 35/59 (59%)
 Frame = +3

Query: 105  QIPSITRAKLLHDAWNLAYAGELXFXTALNMTLFLKTEEDHLVWEAXFPMLDHVGRHIC 281
            ++ +  RA LL DA+NLA AGEL   TAL++T +L  EE ++ W A    +  +   +C
Sbjct: 887  KLSAADRAGLLDDAFNLARAGELPLTTALDLTKYLTKEEMYVPWAAALSNMGFLESRLC 945


>SB_39465| Best HMM Match : PDH (HMM E-Value=1.5)
          Length = 369

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +3

Query: 123 RAKLLHDAWNLAYAGELXFXTALNMTLFLKTEEDHLVWEAXFPMLDHVG 269
           R+ L+ D++ LA +G L   TAL++T +L  E D++ W +    L  +G
Sbjct: 88  RSGLIDDSFALARSGLLKLTTALDLTSYLHNERDYIPWSSALGNLGFIG 136


>SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 791

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = +3

Query: 117 ITRAKLLHDAWNLAYAGELXFXTALNMTLFLKTEEDHLVWEAXFPMLDHV 266
           + R  L+ D++NLA A  L    A+++T++L  E ++L W+     L+++
Sbjct: 527 LDRYGLIDDSFNLARANMLNITKAMDITVYLTKETEYLPWKGAEMNLNYI 576


>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 123 RAKLLHDAWNLAYAGELXFXTALNMTLFLKTEEDHLVW 236
           RA LL +A+ LA   +L +  A  +T FL+ E+ ++ W
Sbjct: 662 RAGLLFNAFKLAMGSQLNYTKAFAITEFLRKEDSYMCW 699


>SB_6723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = +3

Query: 87  RSEXRTQIPSITRAKLLHDAWNLAYAGELXFXTALNMTLFLKTEEDHLVWEAXFPMLDHV 266
           R   R +I  I      H  WN A+  ++   + L + L  +  E HLVW+      D  
Sbjct: 178 RGTSRLEIQLIYERSEAHLVWNTAHLRKIRATSRLEIQLIYERSEAHLVWKYSSSTKDQ- 236

Query: 267 GRHI 278
            RHI
Sbjct: 237 -RHI 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,485,573
Number of Sequences: 59808
Number of extensions: 336467
Number of successful extensions: 518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)