Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0471
(750 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 28 0.092
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 27 0.21
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 27 0.21
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 27 0.21
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 27 0.21
AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax pr... 22 6.0
AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax pr... 22 6.0
AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax pr... 22 6.0
AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax pr... 22 6.0
AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax pr... 22 6.0
AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax pr... 22 6.0
AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein. 22 6.0
AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax pr... 22 6.0
AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduce... 22 6.0
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 27.9 bits (59), Expect = 0.092
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 236 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 349
++ G+++ T KI + W D+ HCD + G +D
Sbjct: 118 YVPPGIFKSTCKIDITWFPFDDQ---HCDMKFGSWTYD 152
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 26.6 bits (56), Expect = 0.21
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 236 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 349
++ G+++ T K+ + W D+ HCD + G +D
Sbjct: 118 YVPPGIFKSTCKMDITWFPFDDQ---HCDMKFGSWTYD 152
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 26.6 bits (56), Expect = 0.21
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 236 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 349
++ G+++ T K+ + W D+ HCD + G +D
Sbjct: 118 YVPPGIFKSTCKMDITWFPFDDQ---HCDMKFGSWTYD 152
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 26.6 bits (56), Expect = 0.21
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 236 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 349
++ G+++ T K+ + W D+ HCD + G +D
Sbjct: 118 YVPPGIFKSTCKMDITWFPFDDQ---HCDMKFGSWTYD 152
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 26.6 bits (56), Expect = 0.21
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 236 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 349
++ G+++ T K+ + W D+ HCD + G +D
Sbjct: 118 YVPPGIFKSTCKMDITWFPFDDQ---HCDMKFGSWTYD 152
>AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.8 bits (44), Expect = 6.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 267 TVPL*TPSSRNGXKSS 220
T PL TPS+ N KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141
>AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.8 bits (44), Expect = 6.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 267 TVPL*TPSSRNGXKSS 220
T PL TPS+ N KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141
>AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax
protein.
Length = 230
Score = 21.8 bits (44), Expect = 6.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 267 TVPL*TPSSRNGXKSS 220
T PL TPS+ N KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141
>AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 21.8 bits (44), Expect = 6.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 267 TVPL*TPSSRNGXKSS 220
T PL TPS+ N KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141
>AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax
protein.
Length = 297
Score = 21.8 bits (44), Expect = 6.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 267 TVPL*TPSSRNGXKSS 220
T PL TPS+ N KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141
>AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax
protein.
Length = 268
Score = 21.8 bits (44), Expect = 6.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 267 TVPL*TPSSRNGXKSS 220
T PL TPS+ N KSS
Sbjct: 82 TPPLSTPSNSNATKSS 97
>AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein.
Length = 312
Score = 21.8 bits (44), Expect = 6.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 267 TVPL*TPSSRNGXKSS 220
T PL TPS+ N KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141
>AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax
protein.
Length = 157
Score = 21.8 bits (44), Expect = 6.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 267 TVPL*TPSSRNGXKSS 220
T PL TPS+ N KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141
>AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduced
Scr protein.
Length = 312
Score = 21.8 bits (44), Expect = 6.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 267 TVPL*TPSSRNGXKSS 220
T PL TPS+ N KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,200
Number of Sequences: 336
Number of extensions: 2716
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -