Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0471
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    38   0.001
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   5.0  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    26   6.6  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   6.6  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    25   8.7  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
 Frame = +2

Query: 188 LEKIVEPTGYKLDLXPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISF---WDVQA 358
           L K V+P  Y L L P L+   Y G V + L  L++S+ ++LH  +   ++    W  Q 
Sbjct: 20  LPKNVKPIHYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRILTAALEWGSQT 79

Query: 359 YPASDAEHPVXRVVVK--ELRMDVKKPILTLYFEKPIPKGTEGHIXLTY 499
             AS+  +   R+V++           +LTL F   I  G EG    +Y
Sbjct: 80  VWASEVSYGDERIVLQFPSTVPANSVAVLTLPFTARISSGMEGFYRSSY 128


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 415 YGRQKADIDFVFRKADPQGNRRSYXVDVSRQYS 513
           Y  +KA+   V   A    N RSY   VSR YS
Sbjct: 20  YKNEKAEPTQVLDAAKANKNTRSYPYSVSRNYS 52


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 248 RRRGTAXSPAYIQSAPRSSPNGFP*RAHMRY 156
           RR  T+   AY+ +   +SP G P R  +RY
Sbjct: 59  RRSPTSPQSAYVPATVYTSPIGSPRRGSVRY 89


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 284 WLQESDELSLHCDHELGISFWDVQAYPAS--DAEHPVXRVVVKE 409
           ++ +S E      +  GI FWD   YP     +E P+  V +K+
Sbjct: 463 YISKSYEFCSSVKNNFGIDFWDQVEYPQPYVASEWPIRYVSIKD 506


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 167 GLAMETRLEKIVEPTGYKLDLXPFLDDGVYRG 262
           G+A  T L KIV+  G KLD+    D GV  G
Sbjct: 309 GVASLTMLPKIVDAVGDKLDV--LFDSGVRSG 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,917
Number of Sequences: 5004
Number of extensions: 44344
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)