Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0471
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0385 + 16574553-16574885                                         29   3.0  
09_04_0414 - 17393780-17394826                                         29   5.2  
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665...    29   5.2  
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197...    29   5.2  

>08_02_0385 + 16574553-16574885
          Length = 110

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 266 VKIQLKWLQESDELSLHCDHE 328
           +KI ++W++E  +L L CDH+
Sbjct: 47  MKIMMRWMREKQKLRLICDHD 67


>09_04_0414 - 17393780-17394826
          Length = 348

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 25/78 (32%), Positives = 37/78 (47%)
 Frame = +2

Query: 218 KLDLXPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQAYPASDAEHPVXRV 397
           K D  PFL +  Y+     ++K L  +D ++   D   G+S  DV   PA+D      R+
Sbjct: 40  KFDFSPFLIE--YKSG---RVKRLMGTDVVAASADVLTGVSSRDVAIDPANDVR---ARL 91

Query: 398 VVKELRMDVKKPILTLYF 451
            +   R   K P+L LYF
Sbjct: 92  YLPSFRATAKVPVL-LYF 108


>07_01_1203 -
           11464142-11464324,11464422-11464484,11464685-11466515,
           11467240-11468036
          Length = 957

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 110 EVSASHIIKARSIDLNNAYGLAMETRLEKIVEPTGYKLDLXPFLDDGVYR 259
           E+S   IIK   +D N    +   TR+ ++ E  G   ++ P  DD   R
Sbjct: 276 EISTWDIIKCAIVDSNCGSRVIATTRISQVAEEVGDIYNMEPLSDDNSKR 325


>06_01_0267 -
           1972988-1973148,1973275-1973403,1973881-1974024,
           1974368-1974493,1974595-1974720,1975149-1975241,
           1975465-1975606,1976747-1976878,1976943-1977080,
           1977431-1977523,1978186-1978389,1978568-1978656,
           1978839-1978988,1979088-1979253,1979355-1979576,
           1979687-1979872,1980289-1980411,1980511-1980611,
           1982005-1982155
          Length = 891

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
 Frame = +2

Query: 47  FGNXARXPV*XXAGGIPSHRQEVSASHIIKARSIDLNNAYGLAMETRLEKIVEPTGYKLD 226
           FG  AR  +    G  P HR E +++ +   R++ + N   L  E   + +      +LD
Sbjct: 365 FGGTARTSLVVTIGPSPRHRGETTSTIMFGQRAMKVENMVKLKEEFDYKSLCRRLDIELD 424

Query: 227 --------LXPFLDDGVYRGTVKIQLKWLQESDELSLHCDHE 328
                      + DD + R T + QL+  +   E  +  ++E
Sbjct: 425 KLIAENERQRKYFDDEIERITAEAQLRVTEAEREYKISLENE 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,630,737
Number of Sequences: 37544
Number of extensions: 326679
Number of successful extensions: 667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)