Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0471
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    36   0.046
SB_18055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)                 28   9.3  
SB_45006| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_22074| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 35.5 bits (78), Expect = 0.046
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 508  IASIRQLYMTFGSLGDRLFEIQSQYRLFDVHTKLLHNDTXYWMF 377
            I SIRQ+  T    G     I   +RL DVH ++  ND  +W F
Sbjct: 1370 ITSIRQVIKTANEYGKNARIILELFRLLDVHDEMALNDIQFWSF 1413


>SB_18055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 467 WGSAFRNTKSISAF*RPYEAPSQRHVXLDVPRQMLDTL 354
           W  AFRN+  +SA  + YE    R   ++ P + LDTL
Sbjct: 18  WADAFRNSPDMSAILQTYE--GLRSQGIEFPPKDLDTL 53


>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
          Length = 1510

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 185  RLEKIVEPTGYKLDLXPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGIS 340
            RL   V P  Y L L   +    Y G+V I +   Q +D + LHC   L ++
Sbjct: 1446 RLPTNVIPNNYDLYLDVNMKKKNYTGSVNILVTVTQSTDLVILHCKGSLRVT 1497


>SB_45006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 185 RLEKIVEPTGYKLDLXPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGIS 340
           RL   V P  Y L L   +    Y G+V I +   Q +D + LHC   L ++
Sbjct: 32  RLPTNVIPNNYDLYLDVNMKKKNYTGSVNILVTVTQSTDLVILHCKGSLRVT 83


>SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 123 VTLSKHEASTSITHMGSLWKPVWRRSWSRLDIS 221
           V+  KH+ +++  +   LWKP  R S    D+S
Sbjct: 244 VSFDKHDLNSNSCNSNQLWKPSLRSSSKAFDVS 276


>SB_22074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 572

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = +1

Query: 421 RQKADIDFVFRKADPQGN----RRSYXVDVSRQYSHG-CHRG 531
           R  A +D  F   DP+GN    R  Y   V + Y+ G CH G
Sbjct: 485 RVDAPLDLSFASIDPRGNFATKRGEYQTSVEKLYTAGDCHYG 526


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,756,895
Number of Sequences: 59808
Number of extensions: 368117
Number of successful extensions: 750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)